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Report for CCDS89635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89635.1 Public Mus musculus 3 Rsrc1 23 108 98 CCDS HistoryNCBI Gene:66880Re-query CCDS DB by CCDS ID:89635.1Re-query CCDS DB by GeneID:66880See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046542.12 ENSMUSP00000047077.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046542.12Link to Ensembl Protein Viewer:ENSMUSP00000047077.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046542Re-query CCDS DB by Protein ID:ENSMUSP00000047077
Original member NCBI NM_001356275.1 NP_001343204.1 Updated not alive Link to Nucleotide Sequence:NM_001356275.1Link to Protein Sequence:NP_001343204.1Re-query CCDS DB by Nucleotide ID:NM_001356275Re-query CCDS DB by Protein ID:NP_001343204
Current member NCBI NM_001356275.2 NP_001343204.1 Accepted alive Link to Nucleotide Sequence:NM_001356275.2Link to Protein Sequence:NP_001343204.1Re-query CCDS DB by Nucleotide ID:NM_001356275Re-query CCDS DB by Protein ID:NP_001343204Link to BLAST:NP_001343204.1

Chromosomal Locations for CCDS 89635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66994519 66994712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67082536 67082709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67180829 67180865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67206426 67206477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67290347 67290415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67349909 67350015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67355474 67355626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67356221 67356313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGGACGCCGGTCTTCAGACACTGAAGAGGAAAGCAGAAGCAAGAGGAAAAAGAAACACCGGAGGCGCT
CGTCTTCAAGCAGCTCTTCAGACAGCAGGACATACAGCCGCAAGAAGGGCGGGAGGAGGCCGAGGTCCGA
CTCAAGGTCCTGGTCTAGAGACCGCCAGCTTCGCTCGCATTCTTATGAGAGAAGGTCCAGGTCAAGGCCT
CGTCCACGCTCACATAGTAGAAGCAGTGAAAGATCCAGTCACAGAAGAACCCGTAGCAGGTCCAGGGACA
GAGACAGACGTAAAGTCCGGGACAAAGAGAAAAGAGAAAAGGAGAAGGATAAAGGCAAAGACAAAGAAGT
GCACAGCATCAAACGCGGGGATTCTGGAAACATCAAAGCTGGATTAGAACATCTGCCTCCAGCTGAGCAG
GCCAAAGCCAGACTGCAATTGGTCCTTGAAGCTGCTGCAAAAGCTGATGAAGCATTAAAAGCCAAAGAAA
GGAGTGAGGAAGAAGCAAAGAGAAGAAAAGAAGAAGACCAAGCCACCCTGGTAGAACAAGTCAAAAGAGT
AAAGGAAATCGAAGCAATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGACGTCAAA
AAGGCAGTAGAACCAAGTGAAGTGCAGCATGTGACTGCGGCATCAGGACCAGCATCCGCAGCTGCTGAGC
CACCCAGCACTGGAAAGGAAATAGACCCTGACAGCATCCCCACGGCTATCAAGTACCAAGATGACAATTC
TCTAGCTCATCCAAATCTATTTATTGAAAAGGCCGAGGCTGAAGAAAAGTGGTTCAAGAGATTAATCGCT
CTCCGACAAGAAAGGCTGATGGGCAGTCCCGTGGCCTAA

Translation (292 aa):
MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRRPRSDSRSWSRDRQLRSHSYERRSRSRP
RPRSHSRSSERSSHRRTRSRSRDRDRRKVRDKEKREKEKDKGKDKEVHSIKRGDSGNIKAGLEHLPPAEQ
AKARLQLVLEAAAKADEALKAKERSEEEAKRRKEEDQATLVEQVKRVKEIEAIESDSFVQQTFRSSKDVK
KAVEPSEVQHVTAASGPASAAAEPPSTGKEIDPDSIPTAIKYQDDNSLAHPNLFIEKAEAEEKWFKRLIA
LRQERLMGSPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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