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Report for CCDS89390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89390.1 Public Mus musculus 19 Tctn3 23 108 98 CCDS HistoryNCBI Gene:67590Re-query CCDS DB by CCDS ID:89390.1Re-query CCDS DB by GeneID:67590See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89390.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132452.1 ENSMUSP00000121760.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132452.1Link to Ensembl Protein Viewer:ENSMUSP00000121760.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132452Re-query CCDS DB by Protein ID:ENSMUSP00000121760
Original member Current member NCBI NM_001365072.1 NP_001352001.1 Accepted alive Link to Nucleotide Sequence:NM_001365072.1Link to Protein Sequence:NP_001352001.1Re-query CCDS DB by Nucleotide ID:NM_001365072Re-query CCDS DB by Protein ID:NP_001352001Link to BLAST:NP_001352001.1

Chromosomal Locations for CCDS 89390.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40607158 40607403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40607626 40607706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40608220 40608255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40608692 40608807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40608902 40609010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40609202 40609332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40611294 40611412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40611651 40611774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40611925 40612144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGTGCACCCTGCAGCTGCACCTGCTGCTGCTGGTGGTCCTGATGCTTTCTGAGACCGCCCGACCGCAGC
CCTCCTCCACAGCCCGGGCTTTCCCCACCTCCTGGGGCCTGGAGCCAGTGACGCCCGAAGTGCCAACCTC
AGCTCCTCCGGATTCGTCTGAGAGTCCGACTCCCTGGACTCTATCGATGCCCGTGAACGCGACCACCGAC
CCCTTTCCAGCTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTG
ACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGATCTTC
AAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACG
GACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACTCAAAAGCAAACTATTTCCAGAAGCTCC
AAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCC
ACCAGAAACCCAGCCGCCAGTACTATTCTATAGGGCTGGGGATCCCATCCTGACCTACTACCCGAGCTGG
TCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTG
CAGGTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTC
GGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAGGTTCCAAGAGGTGTGACTGAT
CTTCAGAATATGAAGTTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAA
ACACATGTCAGAATATCGTTTCCCAGGTCGTCTACGAGATAGAGACCAATGGGACCTTTGGGATCCAGAA
AGTCTCTGTCAGCTTCCGACAGACCAACCTGACTGTCAAGCCAGGGGTCTCCTTACAGCAAGACTTCATC
GTTCACTTCAGGGTCAGCAGCCTTCCCTCTGAGAGAGTTCAGAGGCTGAGTCCCAGAAATAGCACTTTGC
AGAGCCAGTATCCACACTGTCTGTCTGTCTGTCTTTCTGAGTACCTTCTCTTTCTCCTATAA

Translation (393 aa):
MCTLQLHLLLLVVLMLSETARPQPSSTARAFPTSWGLEPVTPEVPTSAPPDSSESPTPWTLSMPVNATTD
PFPALPICVCDLTPGTCDLNCCCDKDCDLLHPRTVFSFCLPGSVRSSSWVCVDNSLMFRSNSPFPSRVFT
DSSGTTQFCVRVNNSKANYFQKLQTVNATNFQALAAEFGGQSFPSMPPETQPPVLFYRAGDPILTYYPSW
SVVSLLRQPAAVGAGGLCAESNPAGFLESKSTTCPRFFRDLASSCTSEPALDAASYYNFRVLKVPRGVTD
LQNMKFQVPVTLASQASPPLLAGNTCQNIVSQVVYEIETNGTFGIQKVSVSFRQTNLTVKPGVSLQQDFI
VHFRVSSLPSERVQRLSPRNSTLQSQYPHCLSVCLSEYLLFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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