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Report for CCDS88401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88401.1 Public Mus musculus 12 Begain 23 108 98 CCDS HistoryNCBI Gene:380785Re-query CCDS DB by CCDS ID:88401.1Re-query CCDS DB by GeneID:380785See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239108.1 ENSMUSP00000159072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239108.1Link to Ensembl Protein Viewer:ENSMUSP00000159072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239108Re-query CCDS DB by Protein ID:ENSMUSP00000159072
Current member NCBI NM_001374202.1 NP_001361131.1 Accepted alive Link to Nucleotide Sequence:NM_001374202.1Link to Protein Sequence:NP_001361131.1Re-query CCDS DB by Nucleotide ID:NM_001374202Re-query CCDS DB by Protein ID:NP_001361131Link to BLAST:NP_001361131.1

Chromosomal Locations for CCDS 88401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109032984 109034351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109035328 109035411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109036996 109037103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109037653 109037719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109038852 109039013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109052834 109052862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109053678 109053701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGGCAGCCATCAGTCTTCCCAGGCCTCTGCCGCAGACATGGAGAAACTCAGTGCCCTCCAGGAACAGA
AGGGCGAGCTGCGCAAGCGGCTCTCCTACACCACGCATAAGCTGGAGAAGCTGGAGACGGAGTTTGACTC
CACGCGCCACTACCTGGAGATTGAGCTGAGGCGTGCCCAGGAGGAGCTAGACAAGGTGACGGAGAAACTG
CGCAGGATTCAGAGCAACTACATGGCGCTGCAGAGGATCAACCAAGAGCTGGAGGACAAGCTGTACCGGA
TGGGCCAGCACTATGAGGAAGAGAAGCGTGCCATGAGCCATGAGATTGTCGCCCTCAACAGCCACCTGCT
GGAGGCTAAGGTGACCATTGACAAGCTGTCGGAGGACAACGAGCTCTATAGGAAGGACTGCAATCTAGCG
GCCCAGCTGCTGCAGTGCAGCCAGACCTACGGCAGGGTCCATAAGGTGTCCGAGCTGCCCTCGGACTTCC
AACAGCGCGTGAGCCTGCACATGGAGAAGCATGGCTGCAGCCTGCCGTCCGCACTGTGCCATCCGGCCTA
CGCCGACAGCGTGCCCACCTGCGTCATCGCCAAAGTGCTGGAGAAGCCGGACCCGGGCAGCCTGTCCTCG
CGCATGTCGGATGCCTCGGCCCGCGACCTGGGCTACCGCGACGGAGTGGAGAAGTCGGGCCCGCGGCCCC
CGTACAAGGGAGACATCTACTGCAGCGACCCAGCTCTCTACTGCCCCGACGAGCGGGAGCACGCCCGGCG
ACCCAGCGTGGACACGCCGGTGACCGACGTGGGCTTCCTGCGGGCGCAGAATTCCACCGACAGCGCGGCG
GAGGAGGAGGAAGAGGCCGAGGCGGCGGCCTTCCCGGAGGCCTACCGTCGGGAGGCCTACCAGGGCTACG
CGGCCTCGCTGCCCACCTCCAGCTCCTACTCCAGCTTCAGCGCCACGTCCGAGGAGAAGGAGCACGCGCA
GGCCGGCACGCTGACCGCCTCGCAGCAGGCCATCTACCTGAGCAGCCGCGACGAGTTCTTCAACCGCAAG
CCCTCCGCCACCTACGGCAGCGGCCCTCGCTTCGCCAAGGCCGCGTCCACCCTGGGCTCCCCGCTGGAGG
CCCAGGTCGCCCCAGGCTTTGCTCGGACTGTGTCTCCGTACCCGGCCGAGCCCTACCGCTACCCGGCCTC
CCCCGGCCCCCAGCAGGCTCTCATGCCTCCAAACCTGTGGAGCCTGCGGGCCAAGCCGAGCGGGAACCGG
CTTGCCGGGGAGGACATTCGAGGCCAGTGGCGGCCCGTGAGCGTGGAGGATGTGGGCGCCTACTCCTACC
AGGCCGGCGCCGCTGCCGGCCGCGCTGCCTCGCCCTGCAACTACTCGGAACGTTACTACGGCGGCGGCGG
CGGCGGGGGCGCCGCTGGCGGCGGCAGCCCCGGCGACAAGGCCGAGGGCCGTGCCAGTCCCCTCTATGCC
ACCTACAAGGCCGATAGTTTCTCGGAGGGCGATGACCTGTCTCAGGGTCATCTGGCCGAGCCCTGCTTCC
TCCGAGCAGGTGGCGATCTGAGCCTCAGTCCCAGTCGTTCGGCTGATGCGCTCGCTGGCTATGCAGCCAG
TGATGGGGATGGAGATAGGCTCAGGGTGCAGCTGTGTGGGGCTGGCAGTAGCCCGGAGCCCGAGCATGGC
TCCCGCGAGTCCCTGGAGCCTAGCTCCATGGAGGCCTCTCCTGAAATGCACCCTCCCACTCGCCTCAGCC
CCCAGCAGGCCTTCCCAAGGACTGGAGGCTCTGGGCTGAGCCGTAAGGACAGTCTCACTAAAGCCCAGCT
CTACGGTACCCTGCTCAACTGA

Translation (613 aa):
MGSHQSSQASAADMEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRRAQEELDKVTEKL
RRIQSNYMALQRINQELEDKLYRMGQHYEEEKRAMSHEIVALNSHLLEAKVTIDKLSEDNELYRKDCNLA
AQLLQCSQTYGRVHKVSELPSDFQQRVSLHMEKHGCSLPSALCHPAYADSVPTCVIAKVLEKPDPGSLSS
RMSDASARDLGYRDGVEKSGPRPPYKGDIYCSDPALYCPDEREHARRPSVDTPVTDVGFLRAQNSTDSAA
EEEEEAEAAAFPEAYRREAYQGYAASLPTSSSYSSFSATSEEKEHAQAGTLTASQQAIYLSSRDEFFNRK
PSATYGSGPRFAKAASTLGSPLEAQVAPGFARTVSPYPAEPYRYPASPGPQQALMPPNLWSLRAKPSGNR
LAGEDIRGQWRPVSVEDVGAYSYQAGAAAGRAASPCNYSERYYGGGGGGGAAGGGSPGDKAEGRASPLYA
TYKADSFSEGDDLSQGHLAEPCFLRAGGDLSLSPSRSADALAGYAASDGDGDRLRVQLCGAGSSPEPEHG
SRESLEPSSMEASPEMHPPTRLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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