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Report for CCDS88210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88210.1 Public Mus musculus 11 Ggnbp2 23 108 98 CCDS HistoryNCBI Gene:217039Re-query CCDS DB by CCDS ID:88210.1Re-query CCDS DB by GeneID:217039See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154915.8 ENSMUSP00000117482.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154915.8Link to Ensembl Protein Viewer:ENSMUSP00000117482.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000154915Re-query CCDS DB by Protein ID:ENSMUSP00000117482
Original member Current member EBI ENSMUST00000168434.7 ENSMUSP00000130013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168434.7Link to Ensembl Protein Viewer:ENSMUSP00000130013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168434Re-query CCDS DB by Protein ID:ENSMUSP00000130013
Original member Current member NCBI NM_001364114.1 NP_001351043.1 Accepted alive Link to Nucleotide Sequence:NM_001364114.1Link to Protein Sequence:NP_001351043.1Re-query CCDS DB by Nucleotide ID:NM_001364114Re-query CCDS DB by Protein ID:NP_001351043Link to BLAST:NP_001351043.1
Original member Current member NCBI NM_001364115.1 NP_001351044.1 Accepted alive Link to Nucleotide Sequence:NM_001364115.1Link to Protein Sequence:NP_001351044.1Re-query CCDS DB by Nucleotide ID:NM_001364115Re-query CCDS DB by Protein ID:NP_001351044Link to BLAST:NP_001351044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351043.1 696 Q5SV77-1 696 100% 0 0
NP_001351044.1 696 Q5SV77-1 696 100% 0 0

Chromosomal Locations for CCDS 88210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 84833010 84833213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84834335 84834583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84836365 84836513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84836599 84836724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84837841 84837988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84839981 84840175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84840261 84840435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84841421 84841624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84854054 84854167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84858440 84858538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84860545 84860798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84862238 84862318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84869877 84869969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGCGCGACTGGTGGCAGTGTGCAGGGACGGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATCCCCC
TCTACATAGACGACACCCTGACGATGGTGATGGAATTTCCTGACAATGTTTTAAATCTTGATGGGCATCA
GAATAATGGTGCACAACTAAAGCAGTTTATTCAGCGACACAGTATGCTTAAGCAACAAGATTTAAGTATT
GCCATGGTGGTAACATCACGCGAAGTCTTGAGTGCACTTTCTCAGCTTGTCCCATGTGTTGGTTGTCGTC
GAAGTGTGGAACGCCTCTTTTCTCAACTTGTAGAGTCTGGAAATCCTGCCCTTGAACCCCTGACAGTAGG
GCCCAAGGGAGTACTATCTCTGACTCGGAGCTGCATGACTGATGCAAAAAAGCTTTATACATTATTTTAT
GTACATGGGTCCAAACTAAATGATATGATAGATGCTATTCCAAAAAGTAAGAAGAACAAGAGATGTCAGT
TACACTCTTTAGATACACACAAACCTAAACCTCTGGGAGGATGTTGGATGGATGTTTGGGAACTCATGTC
CCAGGAATGCAGGGATGAAGTAGTTTTAATTGACTCTAGTTGTCTTTTAGAAACACTAGAAACATATCTT
CGAAAGCACAGGTTTTGCACTGATTGCAAAAATAAAGTCCTCCGAGCATACAATATCCTCATTGGTGAAC
TTGACTGCAGCAAAGAGAAGGGCTACTGTGCTGCCCTGTATGAAGGATTGCGGTGCTGTCCACATGAGCG
ACACATACATGTTTGCTGTGAAACAGACTTCATTGCACATCTCTTGGGTCGTGCTGAGCCAGAGTTCGCA
GGAGGGCGAAGAGAAAGACATGCTAAGACAATAGATATAGCTCAAGAAGAAGTTTTGACCTGCTTGGGGA
TTCATCTTTATGAACGACTGCATCGGATCTGGCAAAAACTACGGGCTGAAGAGCAGACGTGGCAGATGCT
CTTTTATCTCGGTGTTGACGCTTTACGTAAGAGCTTTGAGATGACTGTGGAAAAAGTGCAGGGTATTAGC
CGCTTGGAACAACTTTGTGAGGAATTTTCAGAGGAAGAACGAGTTAGAGAACTCAAGCAAGAAAAGAAAC
GCCAAAAACGGAAGAACAGACGAAAAAATAAGTGTGTGTGTGACACTCCTGCTTCCTTACACACCGCAGA
CGAGAAAGCAGTGAGCCGAGAGAAGGAAACAGACTTCATTGAAAACAGCTGCAACGCCTGTGGCAGTGCT
GAAGATGGCGAGACTTGTGTAGAAGTAATGGTTACCAGTGAAAACACATCATGTACCTGTCCGAGCAGTG
GCAATCTTTTGGGGTCCCCTAAAATAAAGAAAGGTATGTCTCCACACTGTAATGGTAGTGACTGTGGATA
TTCATCTAGCATGGAAGGAAGTGAAACAGGTTCTCGAGAAGGTTCAGATGTTGCCTGCACCGAGGGAATT
TGTAACCATGATGAACATGGTGAAGATTCCTGTGTTCACCACTGTGAAGACAAAGAAGATGATGGTGACA
GTTGTGTTGAATGTTGGGCAAATTCTGAAGAAAATAACATAAAAGGAAAAAATAAAAAGAAGAAAAAGAA
AAGCAAGATGTTGAAATGCGATGAACATATCCAAAAACTTGGAAGCTGTATTACAGATCCAGGTAATCGA
GAGACCTCAGGAAACACTATGCACACAGTGTTTCACCGTGACAAGACCAAAGATGCACATCCTGAGAGTT
GTTGCAGCACTGAGAAGGGTGGGCAGCCATTGCCTTGGTTTGAGCATAGGAAAAGCGTACCACAGTTCAC
AGAACCTACAGAAATGTCATTTGGTCCTGACTCTGGAAAAGGTGCCAAGAGCTTAGTTGAACTTCTTGAT
GAGTCTGAATGTACTTCAGATGAGGAAATCTTTATCTCACAAGATGAAATACAGTCATTTATGGCTAATA
ACCAGTCTTTCTACAGCAATAGAGAACAATACCGACAGCATCTGAAGGAGAAATTTAATAAATACTGCCG
CTTAAATGATCACAAGAGGCCCGTTTGTAGTGGCTGGCTGACAACGGCTGGAGCAAATTAA

Translation (696 aa):
MARLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSMLKQQDLSI
AMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVLSLTRSCMTDAKKLYTLFY
VHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQECRDEVVLIDSSCLLETLETYL
RKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFA
GGRRERHAKTIDIAQEEVLTCLGIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALRKSFEMTVEKVQGIS
RLEQLCEEFSEEERVRELKQEKKRQKRKNRRKNKCVCDTPASLHTADEKAVSREKETDFIENSCNACGSA
EDGETCVEVMVTSENTSCTCPSSGNLLGSPKIKKGMSPHCNGSDCGYSSSMEGSETGSREGSDVACTEGI
CNHDEHGEDSCVHHCEDKEDDGDSCVECWANSEENNIKGKNKKKKKKSKMLKCDEHIQKLGSCITDPGNR
ETSGNTMHTVFHRDKTKDAHPESCCSTEKGGQPLPWFEHRKSVPQFTEPTEMSFGPDSGKGAKSLVELLD
ESECTSDEEIFISQDEIQSFMANNQSFYSNREQYRQHLKEKFNKYCRLNDHKRPVCSGWLTTAGAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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