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Report for CCDS88015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88015.1 Public Mus musculus 10 Reep3 23 108 98 CCDS HistoryNCBI Gene:28193Re-query CCDS DB by CCDS ID:88015.1Re-query CCDS DB by GeneID:28193See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217841.1 ENSMUSP00000151994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217841.1Link to Ensembl Protein Viewer:ENSMUSP00000151994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217841Re-query CCDS DB by Protein ID:ENSMUSP00000151994
Original member NCBI NM_001204915.1 NP_001191844.1 Updated not alive Link to Nucleotide Sequence:NM_001204915.1Link to Protein Sequence:NP_001191844.1Re-query CCDS DB by Nucleotide ID:NM_001204915Re-query CCDS DB by Protein ID:NP_001191844
Current member NCBI NM_001204915.2 NP_001191844.1 Accepted alive Link to Nucleotide Sequence:NM_001204915.2Link to Protein Sequence:NP_001191844.1Re-query CCDS DB by Nucleotide ID:NM_001204915Re-query CCDS DB by Protein ID:NP_001191844Link to BLAST:NP_001191844.1

Chromosomal Locations for CCDS 88015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 67013768 67013786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67014088 67014164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67014902 67015047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67021749 67021893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67034599 67034712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67035885 67036005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67039501 67039577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67062999 67063071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67096790 67096821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGTGTCCTGGATGATCTCCCGAGCCGTGGTGCTGGTGTTTGGAATGCTCTATCCAGCGTACTATTCCT
ACAAAGCCGTGAAGACGAAAAACGTCAAGGAATACGTTCGCTGGATGATGTATTGGATCGTCTTTGCCCT
CTACACTGTCATTGAAACGGTGGCCGATCAGACACTTGCATGGTTTCCCCTGTACTATGAGCTGAAGATT
GCCTTCGTCATTTGGCTGCTGTCGCCCTACACTAGAGGGGCGAGTTTAATCTATAGAAAGTTCCTTCATC
CCCTGCTGTCATCAAAGGAAAGGGAAATTGATGATTATATTGTCCAAGCCAAAGAAAGAGGCTATGAGAC
AATGGTGAATTTTGGACGGCAAGGTTTGAATTTAGCAGCTGCAGCCGCCGTCACTGCAGCAGTGAAGAGC
CAAGGAGCAATAACGGAGCGTCTGCGAAGTTTCAGCATGCATGATCTGACAGCTATCCAAGGGGATGAGC
CCGTGGGACACAGACCCTACCAGACTTTGCCAGAAGCAAAGAGGAAAGGCAAACAAGCCACCGAGTCACC
AGCCTATGGAATTCCACTGAAAGATGGAAGTGAGCAGACAGACGAAGAAGCGGAGGGGCCATTCTCCGAT
GACGAGATGGTGACTCACAAGGCGCTGAGGCGATCCCAGAGCATGAAATCTGTCAAGACCATCAAAGGCC
GCAAAGAGGAATTGAACAAGGACCCCATGCAGGCTATGCAAGAACGACACTTCCGAGCTACATTAGCAGC
ACATTTTATTTTGAGGTGCGGTATGGCTCACTAA

Translation (267 aa):
MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKI
AFVIWLLSPYTRGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNFGRQGLNLAAAAAVTAAVKS
QGAITERLRSFSMHDLTAIQGDEPVGHRPYQTLPEAKRKGKQATESPAYGIPLKDGSEQTDEEAEGPFSD
DEMVTHKALRRSQSMKSVKTIKGRKEELNKDPMQAMQERHFRATLAAHFILRCGMAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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