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Report for CCDS87271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87271.1 Public Homo sapiens 4 IQCM 24 110 108 CCDS HistoryNCBI Gene:285423Re-query CCDS DB by CCDS ID:87271.1Re-query CCDS DB by GeneID:285423See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636414.1 ENSP00000490088.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636414.1Link to Ensembl Protein Viewer:ENSP00000490088.1Re-query CCDS DB by Nucleotide ID:ENST00000636414Re-query CCDS DB by Protein ID:ENSP00000490088
Original member Current member NCBI NM_001363509.2 NP_001350438.1 Accepted alive Link to Nucleotide Sequence:NM_001363509.2Link to Protein Sequence:NP_001350438.1Re-query CCDS DB by Nucleotide ID:NM_001363509Re-query CCDS DB by Protein ID:NP_001350438Link to BLAST:NP_001350438.1
Original member Current member NCBI NM_001378179.1 NP_001365108.1 Accepted alive Link to Nucleotide Sequence:NM_001378179.1Link to Protein Sequence:NP_001365108.1Re-query CCDS DB by Nucleotide ID:NM_001378179Re-query CCDS DB by Protein ID:NP_001365108Link to BLAST:NP_001365108.1

Chromosomal Locations for CCDS 87271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149429974 149430029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149433396 149433557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149548455 149548589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149553143 149553287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149563692 149563890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149587930 149587997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149621129 149621244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149682118 149682206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149686378 149686468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149733244 149733508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149735376 149735458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149742655 149742691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGACTACTGAAGAGGCTATGCCTGAAAAAGCAAAATGTCCTACATTAGAGATCACCAAGCAAGACTTTT
TTCAAGAAGCAAAAACTCTCATTGCCCAACATTATGAGAAAATAAATGAGAATAAAGTTCAAGGTACTTC
TATAAATGTTTTTAGAAAGAAACACCAAAAACCGAAATCTGGCAAATACATACCTTTGGAGATTGACAAA
AAGGTAACACGTGATGTGGTGCAAGAACATCGGGCCGCACTCAGAAGGATTTGCTTTCCCAAGGAGCTTT
CCAAAAGCGAGCATCTTCAGGAACCCCCACAACGAATCTCCTTCAAGGAACCACACATTTTTAGTAGAAG
AGAAAGATGCAGGCCCATAGATCTAATTACAAAAGGACAAGTTAAATTGGATAAAATCATGACTATTATT
GAACCAGTGAGTAAAAAAATGGAGACAGCAAAGCAACAGCACTTTGAGGAGTCCAGAAACAGAATGTTGG
AATTACTCTATCCCTTTCCTGTCCATCTTTACTTACAACCTGGGACCTCTAACTTGGAACTTCTGAAAGA
ACCTGACAAAGCATTCTATGACTGGAGAGGATTTGTGCTGACAAGGTCTTTCCGTTTGGCTTGTGACTCC
CGTCGAGTTAGTTTCTCTCAATCATCATCAATATTTCGGGATTATTATTCTAAAACCTTTAAAACCCTTA
TTAAAAAGGAGCGACAACCTATCAAGCCAGAACCAAAATCACAACCCAGGATAAAAGGTACTCCAAATAA
AACTGATAAACTTGACAGTAAAGTTAAAAGAATTGGACCACACATAGAAATCTTCCAAGTGTTCCGAGAA
AGAAAAAAATTCATGATTACCCCAAAATTGATTAGAATGGTCACCGTCATGCAGGCACATGTCAGGGGAT
GGCTTGAACGGAAAAGATTGCAAAGAGTAATGACCAAGGCTTTGGATCATGGACCAGATATGAAAGCAGT
TATTAACATGTATGGCAGACTAATCCACCGTGTTAGATATCGACGTGGTCTTTGGAGGACAAGACAAATT
CTCAACTTAGCAGAGCTAGAGGAGTGGATGGACCGAAAAAAATTCTATGAAATAATGTTTGCTAAGAGGG
AAGATTGGCCAAAAATTGAAAGAAATGAGCTCCCCAATTTCTTCAGTGACTGTGGTCATTTCCCAACTCA
GAAACAAGTTGATGATACTTGGGACCTGGTCCATCAAGATGGCAAAGAAAAATATTCTGAACTAATCAAA
AAGTCCAAAGCAATTGAAATGTTATTTACACTCTATCCTCCTGAAGGTGCACATGTGCCTGACAGTACAC
TACTCAAGTCGACTTGGTTGAGACCCATAGTAAATGGGGAAGAAGGTTATAGATATATAGTTTTCCACCT
GAAATTATCAGAAGGTGACCTATATCTATTTGTGTTTGTTGTTTAG

Translation (481 aa):
MTTEEAMPEKAKCPTLEITKQDFFQEAKTLIAQHYEKINENKVQGTSINVFRKKHQKPKSGKYIPLEIDK
KVTRDVVQEHRAALRRICFPKELSKSEHLQEPPQRISFKEPHIFSRRERCRPIDLITKGQVKLDKIMTII
EPVSKKMETAKQQHFEESRNRMLELLYPFPVHLYLQPGTSNLELLKEPDKAFYDWRGFVLTRSFRLACDS
RRVSFSQSSSIFRDYYSKTFKTLIKKERQPIKPEPKSQPRIKGTPNKTDKLDSKVKRIGPHIEIFQVFRE
RKKFMITPKLIRMVTVMQAHVRGWLERKRLQRVMTKALDHGPDMKAVINMYGRLIHRVRYRRGLWRTRQI
LNLAELEEWMDRKKFYEIMFAKREDWPKIERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIK
KSKAIEMLFTLYPPEGAHVPDSTLLKSTWLRPIVNGEEGYRYIVFHLKLSEGDLYLFVFVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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