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Report for CCDS85833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85833.1 Public Mus musculus Y Uty 23 108 98 CCDS HistoryNCBI Gene:22290Re-query CCDS DB by CCDS ID:85833.1Re-query CCDS DB by GeneID:22290See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154004.7 ENSMUSP00000114910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154004.7Link to Ensembl Protein Viewer:ENSMUSP00000114910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154004Re-query CCDS DB by Protein ID:ENSMUSP00000114910
Original member NCBI NM_001326683.1 NP_001313612.1 Updated not alive Link to Nucleotide Sequence:NM_001326683.1Link to Protein Sequence:NP_001313612.1Re-query CCDS DB by Nucleotide ID:NM_001326683Re-query CCDS DB by Protein ID:NP_001313612
Current member NCBI NM_001326683.2 NP_001313612.1 Accepted alive Link to Nucleotide Sequence:NM_001326683.2Link to Protein Sequence:NP_001313612.1Re-query CCDS DB by Nucleotide ID:NM_001326683Re-query CCDS DB by Protein ID:NP_001313612Link to BLAST:NP_001313612.1

Chromosomal Locations for CCDS 85833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 1098547 1098573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1099582 1099752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1102765 1102891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1129870 1130011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1131036 1131223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1134872 1134986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1136848 1136996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1137658 1137732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1137807 1137871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1151948 1152153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1152769 1152874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1154155 1154284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1157907 1158634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1168090 1168185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1169123 1169257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1169965 1170184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1170904 1171002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1174728 1174854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1176491 1176584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1186774 1186808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1189336 1189390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1197206 1197326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1199455 1199513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1224497 1224546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1239711 1239819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1245156 1245176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3450 nt):
ATGAAGACGCTGTTGAACAAGGCAATTCACTTCTATGAGTCTTTAATAGTAAAAGCTGAAGGAAAAGTGG
AATCAGATTTCTTTTGTCAATTAGGTCACTTCAATCTCTTACTGGAAGATTATTCAAAAGCATTGTCATC
TTACCAGAGATACTACAGTTTACAGACTGACTACTGGAAGAATGCTGCCTTTTTATATGGTCTTGGTTTG
GTCTATTTCTACTACAATGCATTTCAGTGGGCAATTAGAGCTTTTCAGGAAGTCCTTTATGTTGACCCTA
ATTTTTGCAGAGCCAAAGAAATCCATTTACGACTTGGTTTTATGTTCAAAATGAATACAGATTATGAATC
TAGTTTAAAGCATTTTCAGCTGGCCCTGATCGACTGTAATGTCTGTACTTTGTCCAGTGTCGAAATTCAG
TTTCATATTGCTCACTTATATGAAACCCAGAGGAAATACCATTCTGCAAAGGCAGCCTATGAACAACTTT
TACAGATTGAAAGCTTGCCATCACAAGTCAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCACCATAA
TATGGATCTAATTGGAGACAATACCACCAAAGAGAGATATGCTATTCAGTATCTCCAAAAGTCATTGGAG
GAAGATCCTAATTCTGGTCAATCTTGGTATTTCCTTGGAAGGTGTTACTCATGTATTGGGAAGGTTCAGG
ATGCCTTTGTATCTTACAGGCAATCCATTGATAAATCAGAAGCAAGTGCAGACACATGGTGTTCAATAGG
TGTGCTGTATCAACAGCAAAATCAACCTATGGATGCCTTGCAAGCCTATATATGTGCTGTACAGTTGGAT
CATGGACATGCAGCAGCCTGGATGGACTTAGGTATTCTTTATGAATCTTGCAACCAACCCCAGGATGCCA
TTAAATGCTACTTAAATGCAGCTCGGAGCAAATCTTGTAATAACACCTCTGCACTTACATCAAGAATTAA
GTTTTTACAGGCTCAGTTGTGTAACCTTCCACAAAGTAGTCTACAGAATAAAACTAAATTACTTCCTAGT
ATTGAGGAGGCATGGAGCCTACCAATACCCGCAGAGCTTACCTCCAGGCAGGGTGCCATGAACACAGCAC
AGCAGAGTGTTTCTGATACCTGGAATAGTGTCCAGACAGCTTCACATCATTCAGTACAGCAGAAAGTTTA
TACACAGTGCTTCACAGCACAGAAATTACAGAGTTTTGGTAAAGATCAACAACCTCCATTTCAAACTGGG
TCCACACGATATCTCCAAGCAGCTAGCACTAATGATCAGAATCAGAATGGAAATCATACTCTGCCTCAGA
ATTCAAAAGGGGATGCTCAAAATCACTTCTTACGTATTCCTACCTCAGAAGAACAAAAGATCATTAACTT
TACCAAAGAGAGCAAGGATTCAAGAAGTAAATCCTTGACTTCTAAAACAAGTAGGAAAGATAGAGACACA
TCTAATATCTGTGTTAATGCAAAGAAGCATTCTAATCATATTTATCAGATCTCATCAGTTCCGATTTCCA
GCCTTAATAATAAAGAATCTGTGTCACCAGATTTAATAATTGTAGACAATCCTCAGCTTTCTGTCTTAGT
TGGAGAAACTATCGACAATGTGGACCATGACATTGGAACTTGTGACAAAGTCAATAATGTTCATCTAGCC
ATTCACAAAAAGCCTGATAATCTTTCTGCTTCTTCACCCTCTTCAGCCATTTCCACAGAAACACTTTCTC
TAAAGCTCACTGAACAGACACACATTGTTACCAGCTTTATCAGTCCTCACAGTGGATTACACACAATTAA
TGGAGAAGGGCATGAGAACTTAGAGAGTTCTGCCAGTGTTAATGTTGGCCTCAGACCTAGATCTCAAATC
ATACCATCAATGTCTGTGTCCATATACTCCAGTTCAACAGAAGTTCTGAAAGCGTGCAGGAGTCTAGGTA
AAAATGGTTTGTCTAATGGTCATATTCTCTTGGATATATGCCCACCTCCAAGACCACCAACTTCGCCATA
TCCTCCTTTACCAAAGGAGAAGTTGAATCCACCCACTCCTAGTATTTATTTGGAAAATAAGCGAGATGCC
TTTTTTCCTCCATTACATCAATTTTGCATCAATCCAAAAAACCCTGTTACAGTAATTCGCGGTCTTGCTG
GAGCTCTTAAGTTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAGGCTAACAATGAACATATCGT
AGAAGTGAGGACCCAATTGTTACAGCCAGCAGATGAAAACTGGGATCCCTCTGGAACAAAGAAAATCTGG
CGATATGAAAATAAAAGTTCTCATACTACAATTGCTAAATATGCACAGTACCAGGCCTGCTCCTTCCAGG
AATCATTGAGAGAAGAAAATGAAAGAAGAACACAAGTTAAAGACTATTCAGATAATGAATCAACATGTTC
AGATAATTCTGGAAGGAGACAGAAAGCACCCTTTAAAACCATAAAATGTGGGATTAACATTGATCTGTCT
GATAACAAAAAGTGGAAGTTGCAGTTACATGAGCTGACAAAGCTTCCTGCTTTTGTACGTGTTGTATCAG
CAGGGAATCTTCTCAGTCATGTTGGCTATACTATATTGGGGATGAATTCAGTTCAACTATGTATGAAAGT
TCCAGGGAGTAGAATACCAGGTCACCAAGAAAATAACAATTTCTGTTCTGTTAACATAAATATTGGTCCA
GGTGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATA
ATTTGAATTTCCTGATGAGTTCTTGGTGGCCGAACCTTGAAGATCTTTATGAAGCAAATGTTCCTGTTTA
TAGGTTTATTCAACGACCTGGTGATTTGGTTTGGATAAATGCAGGCACTGTTCACTGGGTTCAGGCTATT
GGGTGGTGTAACAACATCACCTGGAATGTTGGTCCACTCACAGCCTTCCAATATAAATTGGCAGTTGAAC
GATATGAATGGAATAAATTGCAAAGTGTCAAGTCAGTAGTACCCATGGTTCATCTTTCATGGAATATGGC
ACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAATATTGTCTCCTCAAGATTCTAAAG
CATTGTCAGACTTTGAGAGAAGCTCTTGTTGCAGCAGGGAAAGAGGTTTTGTGGCATGGGAGGATAAATG
ATGAACCAGCTCCTTACTGTAGCATCTGTGAGGTGGAAGTTTTTAATTTACTTTTTGTCACTAATGAAAG
CAATTCTCAAAAGACATATATAGTACATTGTCAGAACTGTGCACGAAAAACAAGTGGAAATTTGGAAAAT
TTTGTAGTGCTAGAACAATACAAAATGGAGGACCTGATTCAAGTCTATGACCAATTTACATTAGCTCCTT
CGTTATCTTCTGCATCTTAA

Translation (1149 aa):
MKTLLNKAIHFYESLIVKAEGKVESDFFCQLGHFNLLLEDYSKALSSYQRYYSLQTDYWKNAAFLYGLGL
VYFYYNAFQWAIRAFQEVLYVDPNFCRAKEIHLRLGFMFKMNTDYESSLKHFQLALIDCNVCTLSSVEIQ
FHIAHLYETQRKYHSAKAAYEQLLQIESLPSQVKATVLQQLGWMHHNMDLIGDNTTKERYAIQYLQKSLE
EDPNSGQSWYFLGRCYSCIGKVQDAFVSYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLD
HGHAAAWMDLGILYESCNQPQDAIKCYLNAARSKSCNNTSALTSRIKFLQAQLCNLPQSSLQNKTKLLPS
IEEAWSLPIPAELTSRQGAMNTAQQSVSDTWNSVQTASHHSVQQKVYTQCFTAQKLQSFGKDQQPPFQTG
STRYLQAASTNDQNQNGNHTLPQNSKGDAQNHFLRIPTSEEQKIINFTKESKDSRSKSLTSKTSRKDRDT
SNICVNAKKHSNHIYQISSVPISSLNNKESVSPDLIIVDNPQLSVLVGETIDNVDHDIGTCDKVNNVHLA
IHKKPDNLSASSPSSAISTETLSLKLTEQTHIVTSFISPHSGLHTINGEGHENLESSASVNVGLRPRSQI
IPSMSVSIYSSSTEVLKACRSLGKNGLSNGHILLDICPPPRPPTSPYPPLPKEKLNPPTPSIYLENKRDA
FFPPLHQFCINPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHIVEVRTQLLQPADENWDPSGTKKIW
RYENKSSHTTIAKYAQYQACSFQESLREENERRTQVKDYSDNESTCSDNSGRRQKAPFKTIKCGINIDLS
DNKKWKLQLHELTKLPAFVRVVSAGNLLSHVGYTILGMNSVQLCMKVPGSRIPGHQENNNFCSVNINIGP
GDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAI
GWCNNITWNVGPLTAFQYKLAVERYEWNKLQSVKSVVPMVHLSWNMARNIKVSDPKLFEMIKYCLLKILK
HCQTLREALVAAGKEVLWHGRINDEPAPYCSICEVEVFNLLFVTNESNSQKTYIVHCQNCARKTSGNLEN
FVVLEQYKMEDLIQVYDQFTLAPSLSSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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