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Report for CCDS83528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83528.1 Public Mus musculus 1 Stau2 23 108 98 CCDS HistoryNCBI Gene:29819Re-query CCDS DB by CCDS ID:83528.1Re-query CCDS DB by GeneID:29819See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149320.8 ENSMUSP00000118489.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149320.8Link to Ensembl Protein Viewer:ENSMUSP00000118489.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000149320Re-query CCDS DB by Protein ID:ENSMUSP00000118489
Original member Current member EBI ENSMUST00000128957.8 ENSMUSP00000122410.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128957.8Link to Ensembl Protein Viewer:ENSMUSP00000122410.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000128957Re-query CCDS DB by Protein ID:ENSMUSP00000122410
Original member Current member NCBI NM_001347044.1 NP_001333973.1 Accepted alive Link to Nucleotide Sequence:NM_001347044.1Link to Protein Sequence:NP_001333973.1Re-query CCDS DB by Nucleotide ID:NM_001347044Re-query CCDS DB by Protein ID:NP_001333973Link to BLAST:NP_001333973.1

Chromosomal Locations for CCDS 83528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16345698 16346011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16366079 16366139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16369755 16369886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16374674 16374811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16389821 16390033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16392517 16392624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16394051 16394210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16440323 16440458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16463035 16463194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16486020 16486133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCAAACCCCAAAGAGAAAACTCCAGTGTGTCTGGTAAATGAGTTAGCCCGTTTCCATAGCATCCAAC
CCCAGTATAAGCTTCTGAATGAAAGCGGGCCTGCTCATTCGAAGATGTTTTCGGTGCAGCTGAGTCTTGG
CGAGCAGACATGGGAATCCGAAGGGAGCAGTATAAAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTG
ACTGAATCTACGCTTCCCAAACCAGTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAGGTAGTA
TAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCATCTACAGGCCACTAGA
TCCAAAGCCATTCCCAAATTATAGAGCTAACTACAACTTCCGGGGCATGTACAATCAGAGGTATCATTGC
CCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATTCTTTGGTGAAGGGAAGACTC
GACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCAAGCCCTACAGAATGAGCCAATTCCAGAAAA
GTCTCCCCAGAATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAGGTTATTAAAGAAAGTGGACCAC
CACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGAGAATTTTCTGCAGAAGGAGAGGGAAATAGCAA
AAAACTCTCCAAGAAGCGTGCCGCAACCACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTG
GTAGAGAAGCCAAAACTATTTTTTAAAAAACGCCCTAAAACAATAGTAAAGGCTGGACCCGACTATGGTC
AAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAAGCCAGAAAGGAAAAGGAGCCTGATTACAT
CCTACTCTCAGAACGAGGAATGCCTCGCCGTCGAGAGTTCGTAATGCAGGTCAAGGTAGGCAATGAAGTT
GCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAAAATGCTGCTGAAGCAATGCTGTTACAGCTTG
GCTATAAAGCGTCCACCAGTCTTCAGGATCCGCTCGACAAGACAGGTGAAAACAAAGGATGGAGTGGTCC
AAAGCCTGGGTTTCCTGAACCAACAAATAACACTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTAT
CAAGAGATGGAAGCTAGCCGCCACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATA
TGAACCAACCTTCAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGA
ACTCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTACTTCCCCT
TGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAGGCTTTCAGGTATGA

Translation (511 aa):
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKAL
TESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHC
PMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS
LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPV
VEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV
ATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSP
CSSVQPSKQLEYLARIQGFQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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