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Report for CCDS80439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80439.1 Public Mus musculus 5 Srrt 23 108 98 CCDS HistoryNCBI Gene:83701Re-query CCDS DB by CCDS ID:80439.1Re-query CCDS DB by GeneID:83701See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197466.4 ENSMUSP00000142564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197466.4Link to Ensembl Protein Viewer:ENSMUSP00000142564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197466Re-query CCDS DB by Protein ID:ENSMUSP00000142564
Original member Current member NCBI NM_001109910.1 NP_001103380.1 Accepted alive Link to Nucleotide Sequence:NM_001109910.1Link to Protein Sequence:NP_001103380.1Re-query CCDS DB by Nucleotide ID:NM_001109910Re-query CCDS DB by Protein ID:NP_001103380Link to BLAST:NP_001103380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103380.1 864 Q99MR6-3 864 100% 0 0

Chromosomal Locations for CCDS 80439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137295831 137295906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137295987 137296092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137296218 137296307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137296467 137296623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137296775 137296968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137297079 137297232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137297340 137297513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137297799 137297987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137298228 137298306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137298391 137298452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137298726 137298883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137299558 137299672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137299754 137299852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137299967 137300151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137300244 137300413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137302126 137302314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137302527 137302673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137302912 137303040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137307046 137307167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGGTGACAGTGATGATGAATACGACCGAAGACGCAGGGACAAATTTCGAAGAGAGCGCAGCGATTATG
ACCGTTCCCGGGAAAGGGATGAAAGACGGCGAGGGGACGATTGGAATGACCGAGAGTGGGACCGTGGCCG
GGAGCGCCGCAGTCGGGGTGAATATCGAGACTACGACAGGAACCGAAGGGAGCGCTTCTCTCCCCCTCGA
CACGAACTAAGCCCCCCCCAGAAGCGCATGCGGAGAGACTGGGATGAGCACAGCTCTGACCCATACCACA
GTGGCTATGACATGCCCTATGCTGGGGGGGGTGGGGGACCAACTTACGGCCCCCCTCAGCCCTGGGGCCA
CCCAGACGTCCACATCATGCAGCACCATGTCCTGCCCATCCAGGCCAGGCTGGGCAGCATCGCAGAGATT
GACTTGGGGGTGCCACCGCCCATAATGAAGTCCTTCAAAGAGTTCCTCCTGTCTCTGGATGACTCTGTGG
ATGAGACAGAGGCAGTTAAACGCTACAATGACTACAAGCTGGACTTCCGAAGGCAGCAGATGCAGGACTT
TTTCCTGGCTCACAAAGACGAGGAGTGGTTCCGATCTAAGTACCACCCTGATGAGGTGGGAAAGCGTCGG
CAGGAGGCCCGGGGGGCCCTGCAGAACCGGCTGAAGGTGTTCCTGTCCCTCATGGAGAGTGGCTGGTTTG
ATAACCTTCTCTTGGACATAGACAAAGCTGATGCCATTGTCAAGATGCTAGATGCAGCTGTCATTAAGAT
GGAAGGTGGCACAGAGAACGATCTCCGAATTTTGGAGCAGGAGGAGGAGGAGGAACAGGCAGGCAAGACT
GGGGAGGCCAGCAAGAAAGAGGAGGCCCGTGCTGGACCAGCCCTGGGAGAAGGAGAGCGCAAAGCCAATG
ATAAGGATGAGAAGAAAGAAGATGGAAAACAGGCTGAGAATGACAGTTCCAACGATGACAAAACTAAAAA
ATCTGAGGGTGATGGGGACAAGGAGGAGAAGAAAGAAGAGGCTGAGAAGGAAGCCAAAAAGAGCAAGAAG
CGGAACAGGAAGCAGAGTGGCGATGACAGCTTCGATGAGGGCAGTGTGTCCGAGTCTGAGTCCGAGTCTG
AGGGTGGCCAGGCCGAGGAGGAGAAGGAGGAGGCCGAAGAAGCACTTAAAGAAAAGGAGAAGCCCAAAGA
GGAGGAGAAGGAGAAGCCTAAGGATGCTGCAGGGTTGGAGTGTAAGCCCCGGCCCTTGCATAAGACTTGC
TCTCTCTTCATGCGCAACATCGCACCCAACATTTCAAGGGCAGAGATCATTTCTCTTTGTAAACGATACC
CAGGCTTTATGCGAGTGGCACTGTCAGAGCCCCAGCCAGAGAGGAGGTTTTTTCGCCGTGGCTGGGTGAC
TTTTGACCGCAGTGTTAACATTAAGGAGATCTGTTGGAACCTGCAGAACATTCGGCTCCGGGAGTGTGAA
CTGAGTCCCGGTGTGAACAGAGACCTGACCCGTCGTGTCCGCAACATAAATGGCATTACACAGCACAAGC
AGATAGTGCGCAATGACATCAAGTTGGCAGCCAAGCTAATCCACACACTGGATGACAGGACCCAGCTCTG
GGCCTCTGAGCCTGGGACGCCTCCTGTGCCCACAAGCCTCCCCTCGCAAAACCCCATCCTGAAGAACATC
ACTGACTACCTGATTGAGGAAGTGAGTGCGGAGGAGGAGGAGCTTCTGGGGAGCAGTGGGGGACCCCCTC
CTGAGGAGCCTCCCAAGGAGGGCAACCCAGCCGAGATCAACGTGGAGAGAGATGAGAAGCTGATCAAGGT
CTTGGATAAACTTCTTCTCTATTTGCGTATTGTGCATTCTCTGGATTATTATAACACCTGTGAGTACCCT
AATGAAGACGAGATGCCCAACCGCTGTGGCATAATCCACGTTCGGGGGCCCATGCCTCCCAACCGAATTA
GTCACGGAGAAGTGCTGGAGTGGCAGAAGACATTTGAGGAGAAACTGACTCCACTGTTGAGTGTGCGTGA
ATCCCTTTCTGAGGAAGAGGCCCAGAAGATGGGTCGAAAAGACCCAGAGCAGGAAGTGGAGAAGTTTGTC
ACCTCCAACACGCAGGAACTGGGCAAGGATAAGTGGCTATGTCCTCTCAGTGGCAAGAAATTCAAGGGCC
CGGAGTTTGTGCGCAAGCATATCTTCAATAAGCATGCCGAGAAGATCGAGGAGGTGAAGAAGGAGGTGGC
GTTCTTCAATAACTTTCTCACAGACGCCAAGCGCCCAGCTTTGCCTGAGATCAAGCCAGCTCAGCCACCT
GGCCCTGCCCAGAGCCTGACCCCAGGACTTCCCTACCCACATCAGACGCCACAGGGCTTGATGCCATATG
GTCAGCCCCGGCCTCCCATCTTGGGCTATGGAGTCCCAACAGGAGGGCCTCCATACCCCCATGCTCCATA
TGGTGCCGGCCGTGGGAACTATGATGCTTTTCGAGGCCAAGGCGGTTATCCTGGGAAACCTCGGAACAGG
ATGGTTCGAGGAGACCCAAGGGCCATAGTGGAGTATCGGGACCTGGATGCCCCGGATGATGTTGACTTCT
TTTGA

Translation (864 aa):
MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPR
HELSPPQKRMRRDWDEHSSDPYHSGYDMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEI
DLGVPPPIMKSFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRR
QEARGALQNRLKVFLSLMESGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRILEQEEEEEQAGKT
GEASKKEEARAGPALGEGERKANDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEEAEKEAKKSKK
RNRKQSGDDSFDEGSVSESESESEGGQAEEEKEEAEEALKEKEKPKEEEKEKPKDAAGLECKPRPLHKTC
SLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECE
LSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPVPTSLPSQNPILKNI
TDYLIEEVSAEEEELLGSSGGPPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYP
NEDEMPNRCGIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFV
TSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPP
GPAQSLTPGLPYPHQTPQGLMPYGQPRPPILGYGVPTGGPPYPHAPYGAGRGNYDAFRGQGGYPGKPRNR
MVRGDPRAIVEYRDLDAPDDVDFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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