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Report for CCDS80344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80344.1 Public Mus musculus 5 Fgf5 23 108 98 CCDS HistoryNCBI Gene:14176Re-query CCDS DB by CCDS ID:80344.1Re-query CCDS DB by GeneID:14176See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200059.1 ENSMUSP00000142420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200059.1Link to Ensembl Protein Viewer:ENSMUSP00000142420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200059Re-query CCDS DB by Protein ID:ENSMUSP00000142420
Original member NCBI NM_001277268.1 NP_001264197.1 Updated not alive Link to Nucleotide Sequence:NM_001277268.1Link to Protein Sequence:NP_001264197.1Re-query CCDS DB by Nucleotide ID:NM_001277268Re-query CCDS DB by Protein ID:NP_001264197
Current member NCBI NM_001277268.2 NP_001264197.1 Accepted alive Link to Nucleotide Sequence:NM_001277268.2Link to Protein Sequence:NP_001264197.1Re-query CCDS DB by Nucleotide ID:NM_001277268Re-query CCDS DB by Protein ID:NP_001264197Link to BLAST:NP_001264197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264197.1 121 P15656-2 121 100% 0 0

Chromosomal Locations for CCDS 80344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 98254412 98254760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98275211 98275227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGAGCCTGTCCTTGCTCTTCCTCATCTTCTGCAGCCACCTGATCCACAGCGCTTGGGCTCACGGGGAGA
AGCGTCTCACTCCCGAAGGGCAACCCGCGCCTCCTAGGAACCCGGGAGACTCCAGCGGCAGCCGGGGCAG
AAGTAGCGCGACGTTTTCTTCGTCTTCTGCCTCCTCACCAGTCGCAGCTTCTCCGGGCAGCCAAGGAAGC
GGCTCGGAACATAGCAGTTTCCAGTGGAGCCCTTCGGGGCGCCGGACCGGCAGCCTGTACTGCAGAGTGG
GCATCGGTTTCCATCTGCAGATCTACCCGGATGGCAAAGTCAATGGCTCCCACGAAGCCAGTGTGTTAAG
CCAAATTTACGGATGA

Translation (121 aa):
MSLSLLFLIFCSHLIHSAWAHGEKRLTPEGQPAPPRNPGDSSGSRGRSSATFSSSSASSPVAASPGSQGS
GSEHSSFQWSPSGRRTGSLYCRVGIGFHLQIYPDGKVNGSHEASVLSQIYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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