NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78509.1 Public Homo sapiens X ARHGEF6 24 110 108 CCDS HistoryNCBI Gene:9459Re-query CCDS DB by CCDS ID:78509.1Re-query CCDS DB by GeneID:9459See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78509.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370620.5 ENSP00000359654.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370620.5Link to Ensembl Protein Viewer:ENSP00000359654.1Re-query CCDS DB by Nucleotide ID:ENST00000370620Re-query CCDS DB by Protein ID:ENSP00000359654
Original member Current member EBI ENST00000370622.5 ENSP00000359656.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370622.5Link to Ensembl Protein Viewer:ENSP00000359656.1Re-query CCDS DB by Nucleotide ID:ENST00000370622Re-query CCDS DB by Protein ID:ENSP00000359656
Original member Current member NCBI NM_001306177.2 NP_001293106.1 Accepted alive Link to Nucleotide Sequence:NM_001306177.2Link to Protein Sequence:NP_001293106.1Re-query CCDS DB by Nucleotide ID:NM_001306177Re-query CCDS DB by Protein ID:NP_001293106Link to BLAST:NP_001293106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293106.1 622 Q15052-2 622 100% 0 0

Chromosomal Locations for CCDS 78509.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136668029 136668169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136669482 136669536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136672020 136672119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136675007 136675096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136676624 136676717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136677936 136677956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136679535 136679660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136680731 136680876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136681890 136681968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136682758 136682844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136685677 136685823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136687932 136687991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136690610 136690748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136706908 136707030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136708675 136708770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136713276 136713370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136732102 136732172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136743585 136743783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGACGGAAAATGGAAGTCATCAGTTGATAGTAAAAGCAAGATTCAACTTTAAGCAGACTAATGAGGATG
AACTGTCAGTTTGTAAGGGGGACATCATTTACGTCACACGAGTTGAAGAAGGAGGCTGGTGGGAAGGCAC
ATTAAATGGGAGAACAGGCTGGTTCCCCAGTAATTATGTCCGTGAAATTAAATCCAGTGAGAGACCTCTC
TCCCCAAAAGCCGTCAAAGGATTTGAAACTGCTCCACTTACCAAGAATTATTATACTGTGGTGTTACAGA
ACATCCTGGACACTGAAAAAGAATATGCTAAAGAACTTCAGTCTCTTCTTGTTACTTACTTAAGACCCCT
GCAGTCCAATAACAATCTGAGTACTGTGGAGGTTACATCTTTACTGGGAAACTTCGAGGAAGTATGCACA
TTTCAACAGACACTCTGCCAAGCCTTGGAAGAATGTTCAAAGTTTCCAGAAAACCAGCACAAAGTAGGAG
GTTGTCTACTGAGTCTCATGCCTCATTTTAAATCTATGTATCTGGCTTACTGTGCAAACCATCCTTCAGC
TGTAAATGTGCTCACTCAGCACAGTGATGAGTTGGAACAATTCATGGAAAATCAAGGTGCATCGAGCCCA
GGTATCCTCATTTTAACAACAAACCTCAGCAAACCATTCATGCGACTGGAGAAATATGTTACTCTCTTGC
AAGAGTTAGAACGGCATATGGAGGATACTCATCCAGATCATCAGGATATTCTGAAAGCAATCGTAGCATT
CAAAACTCTCATGGGGCAATGTCAAGATCTGAGGAAGAGAAAACAGCTGGAGTTACAGATACTGTCCGAA
CCTATTCAGGCATGGGAAGGAGAAGATATTAAAAACTTGGGAAATGTGATTTTTATGTCACAAGTAATGG
TGCAGTATGGAGCATGTGAGGAAAAAGAGGAGCGGTACCTTATGTTATTTTCAAATGTCCTGATAATGTT
ATCTGCAAGTCCTCGGATGAGTGGCTTTATCTATCAGGGAAAAATACCAATAGCAGGAACGGTGGTGACT
AGATTAGATGAAATTGAAGGGAATGACTGCACATTTGAAATCACTGGTAACACAGTGGAGAGAATTGTGG
TCCATTGTAACAACAACCAGGACTTCCAGGAATGGTTGGAGCAGCTGAACAGACTGATCAGAGGACCTGC
CTCTTGCAGTTCATTATCCAAAACCTCATCGTCATCATGTAGTGCTCATTCTTCTTTTAGCTCTACCGGA
CAGCCCCGAGGACCCTTGGAGCCTCCTCAAATTATAAAACCGTGGAGTTTAAGTTGTCTACGACCTGCAC
CTCCACTTAGACCATCAGCAGCACTAGGTTATAAAGAGAGGATGTCTTATATCTTAAAGGAGTCTAGTAA
AAGCCCTAAAACGATGAAGAAATTTCTTCATAAAAGGAAGACTGAGAGAAAACCATCGGAGGAGGAATAT
GTGATTAGGAAAAGTACAGCTGCTCTGGAAGAGGATGCTCAAATCCTTAAAGTGATCGAAGCCTACTGCA
CCAGCGCAAATTTTCAACAAGGCCATGGCTCAAGTACTCGAAAAGATTCCATTCCACAAGTCCTACTCCC
TGAGGAAGAGAAACTCATCATTGAAGAAACCAGAAGCAACGGCCAGACCATCATGGAAGAAAAGAGCCTT
GTTGATACTGTTTACGCCTTGAAGGACGAGGTCAGAGAACTGAAGCAGGAAAATAAAAGAATGAAGCAAT
GCCTGGAAGAAGAACTGAAATCAAGAAGGGACCTAGAAAAGCTGGTGCGGAGGCTTTTGAAGCAAACAGA
TGAGTGTATTCGAGGCGAGTCCAGTAGCAAGACCTCAATTCTTCCATAA

Translation (622 aa):
MTENGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERPL
SPKAVKGFETAPLTKNYYTVVLQNILDTEKEYAKELQSLLVTYLRPLQSNNNLSTVEVTSLLGNFEEVCT
FQQTLCQALEECSKFPENQHKVGGCLLSLMPHFKSMYLAYCANHPSAVNVLTQHSDELEQFMENQGASSP
GILILTTNLSKPFMRLEKYVTLLQELERHMEDTHPDHQDILKAIVAFKTLMGQCQDLRKRKQLELQILSE
PIQAWEGEDIKNLGNVIFMSQVMVQYGACEEKEERYLMLFSNVLIMLSASPRMSGFIYQGKIPIAGTVVT
RLDEIEGNDCTFEITGNTVERIVVHCNNNQDFQEWLEQLNRLIRGPASCSSLSKTSSSSCSAHSSFSSTG
QPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALGYKERMSYILKESSKSPKTMKKFLHKRKTERKPSEEEY
VIRKSTAALEEDAQILKVIEAYCTSANFQQGHGSSTRKDSIPQVLLPEEEKLIIEETRSNGQTIMEEKSL
VDTVYALKDEVRELKQENKRMKQCLEEELKSRRDLEKLVRRLLKQTDECIRGESSSKTSILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH