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Report for CCDS75214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75214.1 Public Homo sapiens 4 HELT 24 110 108 CCDS HistoryNCBI Gene:391723Re-query CCDS DB by CCDS ID:75214.1Re-query CCDS DB by GeneID:391723See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515777.6 ENSP00000426033.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000515777.6Link to Ensembl Protein Viewer:ENSP00000426033.1Re-query CCDS DB by Nucleotide ID:ENST00000515777Re-query CCDS DB by Protein ID:ENSP00000426033
Original member Current member NCBI NM_001300781.2 NP_001287710.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001300781.2Link to Protein Sequence:NP_001287710.1Re-query CCDS DB by Nucleotide ID:NM_001300781Re-query CCDS DB by Protein ID:NP_001287710Link to BLAST:NP_001287710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287710.1 242 A6NFD8-3 242 100% 0 0

Chromosomal Locations for CCDS 75214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185018929 185018955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185019387 185019491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185019747 185019843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185020273 185020772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGTCAGACAAGCTCAAGGAACGCAAAAGAACCCCCGTTTCTCATAAAGTGATAGAAAAGCGGAGGAGGG
ACAGGATCAACCGCTGCTTGAACGAGCTGGGCAAGACAGTGCCCATGGCCTTGGCGAAGCAGAGTTCCGG
GAAGCTGGAGAAGGCGGAGATCCTCGAGATGACCGTTCAGTACCTGAGAGCACTGCACTCCGCTGATTTT
CCCCGGGGAAGGGAAAAAGCAGAACTTCTAGCGGAGTTTGCCAACTACTTCCACTATGGCTACCACGAGT
GCATGAAGAACCTGGTGCATTACCTCACCACGGTGGAGCGGATGGAGACCAAGGACACGAAGTACGCGCG
CATCCTCGCCTTCTTGCAGTCCAAGGCCCGCCTGGGCGCGGAGCCCGCCTTTCCGCCGCTGGGTTCGCTC
CCGGAGCCGGATTTCTCCTATCAGCTGCACCCTGCGGGGCCCGAATTCGCTGGTCACAGCCCGGGCGAGG
CCGCTGTGTTCCCGCAGGGCTCTGGTGCCGGGCCTTTCCCCTGGCCGCCTGGCGCGGCCCGCAGCCCCGC
GCTGCCCTACCTGCCCAGCGCGCCAGTGCCGCTCGCTAGCCCAGCGCAGCAGCACAGCCCCTTCCTGACA
CCGGTGCAGGGCCTGGACCGGCATTACCTCAACCTGATCGGCCACGCGCACCCCAACGCCCTTAACCTGC
ACACGCCCCAGCACCCCCCGGTGCTCTGA

Translation (242 aa):
MSDKLKERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRALHSADF
PRGREKAELLAEFANYFHYGYHECMKNLVHYLTTVERMETKDTKYARILAFLQSKARLGAEPAFPPLGSL
PEPDFSYQLHPAGPEFAGHSPGEAAVFPQGSGAGPFPWPPGAARSPALPYLPSAPVPLASPAQQHSPFLT
PVQGLDRHYLNLIGHAHPNALNLHTPQHPPVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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