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Report for CCDS72393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72393.1 Public Mus musculus X Pdzd4 23 108 98 CCDS HistoryNCBI Gene:245469Re-query CCDS DB by CCDS ID:72393.1Re-query CCDS DB by GeneID:245469See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114438.2 ENSMUSP00000110081.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114438.2Link to Ensembl Protein Viewer:ENSMUSP00000110081.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114438Re-query CCDS DB by Protein ID:ENSMUSP00000110081
Original member Current member NCBI NM_001290540.1 NP_001277469.1 Accepted alive Link to Nucleotide Sequence:NM_001290540.1Link to Protein Sequence:NP_001277469.1Re-query CCDS DB by Nucleotide ID:NM_001290540Re-query CCDS DB by Protein ID:NP_001277469Link to BLAST:NP_001277469.1

Chromosomal Locations for CCDS 72393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73794382 73795920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73796101 73796211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73796376 73796477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73796830 73796892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73798194 73798292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73824282 73824341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGGATGTAATATGTGTGTGGTCCAGAAACCGGAGGAGCAGTACAAAGTGATGCTTCAGGAGGTGGAGC
TGTGTAAAAACAGCCACCAAGACAAGCTGGGCCTGATGGTGTGCTATCGCACAGATGAGGAGGAGGACCT
AGGCATCTACGTTGGAGAGGTAAATCCCAACAGCATTGCAGCCAAAGATGGCCGGATCCGTGAGGGAGAC
AGAATCATCCAGATTAATGGAATGGATGTCCAAAATCGAGAGGAGGCAGTGGCCATCCTGAGCCAGGAGG
AGAACACTAACATCTCCCTGCTGGTGGCCCGACCTGAGAGCCAGCTAGCAAAGCGGTGGAAAGACAGTGA
CAGAGATGACTTCCTAGATGACTTTGGATCTGAGAATGAAGGGGACCTTCGTGCTAGGAAGCTAAAGTCA
CCTCCTGTCCAGCAGATTGGAAATGATGAGAAGGGGGCTCCTGATGGGGGCCCAGGCTTAAACAACAGCC
AGGACCTGGACAGCGGGGTGGGTCGGACTGATGAGAGTACCCGCAATGAAGAGAGCTCTGAACATGACCT
GCTGGGGGATGAACCTCCCAGCACCACCAACACTCCTGGAAGCCTACGCAAATTTGGTCTACAAGGGGAT
GCCCTACAGAGCAGGGACTTCCACTTCAGCATGGATTCTCTGTTAGCTGAGGGGGCAGGGCTGGGAGGGG
CTGACCTACCTGGGCTCACTGATGAGGAGTATGAACGCTACCGGGAGCTGCTGGAGATCAAGTGCCACCT
GGAAAATGGCAACCAGCTGGGCATCTTCTTCTCCCGGGCCTCCAGTGGCAACAGTGCCCTAGATGTCAAC
CGCAATGAGAGCCTAGGCCATGAGATGGCCATGCTGGAGGAAGAGCTTCGGCACCTAGAGTTCAAGTGCC
GCAATATCTTGCGGGCACAGAAGATGCAGCAGTTGCGGGAGCGCTGTATGAAGGCCTGGCTGCTGGAGGA
GGAAAGTCTCTATGACCTGGCAGCCAGTGAGCCCAAAAAGCATGAGCTGTCTGATATCTCTGAACTGCCA
GAGAAATCAGACAAAGATAGCACCAGCGCTTACAACACGGGGGAGAGCTGCCGCAGCACTCCACTTCTTG
TGGAGCCTCTGCCTGAGAGCCCGCTGAAGCGATCTGGTGCTGGCAATTCCAACTTGAATCGGACCCCTTC
TGGCCCTCCTGTCACCACCCACCTCAAGGGGGCTCCTTCACCAGGGAGCCCAGCTAAGTTCCGATCACTC
TCTCGGGATCCTGAAGTGGGCCGGAGACAGCACACAGAAGAGCGTGTCCGCCGGAGCACCAAGACAAGTG
TTACTCTGGAGCGTGTGGGCCCTGAAGGCAGCCCTTACCTCTCCAGGCGCCATCGTGGCCAGGAGATTGA
GCAGTACCACAGCTGTGTGCAGTTGGCCCCGCCACGCACCCTGGAGGATCTGGGCCATGGCTCCTTGAGC
TTGGCTAGTGGTCCTCGGGTGGGTGGGGTGGCAGCTGCAGCTGTCGAAGCACCCCGCATGGAGTGGAAGG
TGAAGGTGCGAAGTGATGGAACCCGCTATGTGGCCAAGCGACCTGTGCGAGATCGGCTGCTGAAGGCCAG
GGCCCTGAAGATCCGAGAGGAACGCAGTGGTATGACCACTGATGATGATGCAGTGAGTGAGATGAAGATG
GGCCGCTACTGGAGCAAGGAAGAGAGGAAGCAACACCTGATCCGAGCACGGGAGCAACGGAAGCGGCGTG
AGTTCATGATGCAGAGCCGTCTGGAGTGTCTAAGGGAGCAGCAGAATGGTGACAGCAAACCTGAGCTCAA
CATCATTGCGCTGAGCCACCGTAAAACCATGAAGAAGCGAAACAAGAAGATTCTGGACAACTGGATCACC
ATCCAGGAGATGTTGGCTCATGGTGCCCGCTCAGCTGATGGAAAAAGGATCTACAACCCTCTGCTCTCTG
TCACCACTGTCTGA

Translation (657 aa):
MGCNMCVVQKPEEQYKVMLQEVELCKNSHQDKLGLMVCYRTDEEEDLGIYVGEVNPNSIAAKDGRIREGD
RIIQINGMDVQNREEAVAILSQEENTNISLLVARPESQLAKRWKDSDRDDFLDDFGSENEGDLRARKLKS
PPVQQIGNDEKGAPDGGPGLNNSQDLDSGVGRTDESTRNEESSEHDLLGDEPPSTTNTPGSLRKFGLQGD
ALQSRDFHFSMDSLLAEGAGLGGADLPGLTDEEYERYRELLEIKCHLENGNQLGIFFSRASSGNSALDVN
RNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAASEPKKHELSDISELP
EKSDKDSTSAYNTGESCRSTPLLVEPLPESPLKRSGAGNSNLNRTPSGPPVTTHLKGAPSPGSPAKFRSL
SRDPEVGRRQHTEERVRRSTKTSVTLERVGPEGSPYLSRRHRGQEIEQYHSCVQLAPPRTLEDLGHGSLS
LASGPRVGGVAAAAVEAPRMEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKM
GRYWSKEERKQHLIRAREQRKRREFMMQSRLECLREQQNGDSKPELNIIALSHRKTMKKRNKKILDNWIT
IQEMLAHGARSADGKRIYNPLLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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