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Report for CCDS72072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72072.1 Public Mus musculus 7 Lsp1 23 108 98 CCDS HistoryNCBI Gene:16985Re-query CCDS DB by CCDS ID:72072.1Re-query CCDS DB by GeneID:16985See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105967.7 ENSMUSP00000101587.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105967.7Link to Ensembl Protein Viewer:ENSMUSP00000101587.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105967Re-query CCDS DB by Protein ID:ENSMUSP00000101587
Original member NCBI NM_001271509.1 NP_001258438.1 Updated not alive Link to Nucleotide Sequence:NM_001271509.1Link to Protein Sequence:NP_001258438.1Re-query CCDS DB by Nucleotide ID:NM_001271509Re-query CCDS DB by Protein ID:NP_001258438
Current member NCBI NM_001271509.2 NP_001258438.1 Accepted alive Link to Nucleotide Sequence:NM_001271509.2Link to Protein Sequence:NP_001258438.1Re-query CCDS DB by Nucleotide ID:NM_001271509Re-query CCDS DB by Protein ID:NP_001258438Link to BLAST:NP_001258438.1

Chromosomal Locations for CCDS 72072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142460899 142460966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142484479 142484625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142486347 142486505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142488419 142488515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142488866 142488940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489129 142489172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489325 142489406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489900 142490034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142490345 142490422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142490559 142490648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCGGAGGCTGCCATCGATCCCAGATGCGAGGAACAGGAAGAGCTCCATGCAGAAGACAGCGAAGGGC
TCACAACTCAGTGGAGAGAAGAAGACGAGGAAGAGGCTGCCCGTGAGCAGCGTCAACGGGAGCGAGAGAG
GCAGCTACAGGACCAGGACAAAGATAAAGAAGATGATGGTGGCCATTCCCTGGAACAGCCAGGACAGCAG
ACACTCATCAGCCTGAAGTCCTCTGAACTGGATGAAGATGAGGGTTTTGGTGACTGGTCCCAAAAGCCGG
AGCCACGGCAGCAATTCTGGGGGAATGAGGGGACTGCAGAAGGGACTGAACCCTCTCAAAGCGAGAGACC
AGAGGAGAAACAAACAGAGGAGAGTTCTCACCAAGCCAAAGTCCACTTGGAGGAGTCAAACCTGAGCTAC
AGGGAGCCCGATCCAGAGGATGCTGTTGGGGGTTCTGGGGAGGCGGAAGAGGTCAGGACCCCCAGCCCTT
TGGCCTTAGAAGACACCGTTGAGCTGAGTTCACCTCCCCTGAGCCCTACCACCAAACTGGCTGATAGGAC
CGAGTCCCTGAACCGCTCCATTAAAAAGAGCAACAGTGTGAAGAAGTCTCAACCAACCTTGCCCATTTCC
ACAATTGATGAACGCCTGCAGCAGTATACCCAGGCCACTGAGTCTTCTGGCCGAACTCCTAAGCTGTCCC
GCCAGCCCTCCATAGAGCTGCCCAGCATGGCCGTAGCCAGTACCAAGACTCTTTGGGAAACAGGAGAAGT
GCAGAGTCAGTCTGCTTCTAAGACACCCTCCTGCCAGGATATAGTAGCTGGAGACATGAGCAAGAAAAGT
CTGTGGGAGCAGAAAGGAGGCTCCAAGATCTCATCCACCATCAAGAGCACCCCATCTGGAAAGCGGTACA
AGTTCGTGGCCACTGGACATGGGAAGTACGAGAAAGTACTTGTGGATGAGGGCTCAGCACCATAG

Translation (324 aa):
MAEAAIDPRCEEQEELHAEDSEGLTTQWREEDEEEAAREQRQRERERQLQDQDKDKEDDGGHSLEQPGQQ
TLISLKSSELDEDEGFGDWSQKPEPRQQFWGNEGTAEGTEPSQSERPEEKQTEESSHQAKVHLEESNLSY
REPDPEDAVGGSGEAEEVRTPSPLALEDTVELSSPPLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPIS
TIDERLQQYTQATESSGRTPKLSRQPSIELPSMAVASTKTLWETGEVQSQSASKTPSCQDIVAGDMSKKS
LWEQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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