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Report for CCDS71607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71607.1 Public Mus musculus 5 Exoc1 23 108 98 CCDS HistoryNCBI Gene:69940Re-query CCDS DB by CCDS ID:71607.1Re-query CCDS DB by GeneID:69940See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087133.10 ENSMUSP00000084373.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087133.10Link to Ensembl Protein Viewer:ENSMUSP00000084373.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087133Re-query CCDS DB by Protein ID:ENSMUSP00000084373
Original member NCBI NM_001289770.1 NP_001276699.1 Updated not alive Link to Nucleotide Sequence:NM_001289770.1Link to Protein Sequence:NP_001276699.1Re-query CCDS DB by Nucleotide ID:NM_001289770Re-query CCDS DB by Protein ID:NP_001276699
Current member NCBI NM_001289770.2 NP_001276699.1 Accepted alive Link to Nucleotide Sequence:NM_001289770.2Link to Protein Sequence:NP_001276699.1Re-query CCDS DB by Nucleotide ID:NM_001289770Re-query CCDS DB by Protein ID:NP_001276699Link to BLAST:NP_001276699.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276699.1 894 Q8R3S6 894 100% 0 0

Chromosomal Locations for CCDS 71607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76532765 76532888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76535554 76535684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76537698 76537857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76542051 76542238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76543455 76543682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76543878 76544010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76545254 76545363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76549452 76549601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76554100 76554205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76557819 76557863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76559004 76559167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76559718 76559825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76560330 76560406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76561292 76561520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76563230 76563413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76566957 76567156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76567967 76568161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76569618 76569770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGACAGCAATCAAGCATGCGCTGCAGAGAGATATCTTCACACCAAATGATGAACGCCTGCTGAGCATCG
TGAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACTGTTTTCTGTGTGCCACAGTGACCACTGAACGCCC
CGTGCAGGTGAAGGTGGTCAAAGTCAAGAAATCCGACAAGGGAGATTTCTACAAAAGGCAGATTGCTTGG
GCCCTGCGAGACCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGAAAACCCGGAATTTGATTTGCATT
TTGAGAAGGTCTATAAGTGGGTGGCCAGCAGCACGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGAA
GCTGAACCAGCGCTACCTGCGCAAGAAAATCGACTTTGTTAATGTTAGCTCGCAGCTTTTGGAAGAATCT
GTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGGGGATGAAGAAGCGGTAGATGAGTACCAAGAGTTAA
ATGCAAGAGAAGAGCAGGACATCGAGATAATGATGGAAGGCTGCGAGTGCGCCATTTCTAACGCTGAAGC
CTTTGCGGAGAAGTTGTCCCGGGAGCTGCAGGTGCTCGATGGGGCCAACATTCAGTCAATCATGGCCTCT
GAGAAACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGCGCTAACGGAGGTGGACCAGATTGAACTGA
AACTGAGCAGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAGATGGATCAGATCTCTGAGAGCAACCA
CCTGATCCATCTCAGCAACACGAATAATGTGAAGCTCCTGTCCGAGATAGAGTTCCTCGTGAACCACATG
GACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCT
GCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCCCAGGCCATGACATGCTCCT
GGCCGTCAAGCAGCAGCAGCAGCGCTTCAGTGACCTGAGGGAACATTTCGCCCGGAGACTGGCCAGCCAT
CTCAACAATGTTTTTGTTCAACAGGGTCATGATCAGAGTTCAACTCTTGCTCAGCACTCTGTTGAACTGA
CTCTACCCAATCACCATCCATTTCATAGAGACTTGCTCCGCTATGCCAAGCTGATGGAGTGGCTAAAGAG
TACAGACTATGGAAAATACGAGGGACTAACAAAGAATTACATGGATTATTTATCCCGACTATATGAAAGA
GAAATCAAAGATTTCTTTGAAGTTGCAAAGATGAAGATGACTGGCACCTCTAAAGAAAGCAAGAAGTTTG
CTACACTGCCTCGAAAAGAAAGTGCTGTCAAGCAGGAAACAGAGAGTCTCCATGGAAGCTCTGGGAAACT
CACTGGATCAACTTCTAGTCTGAATAAACTCAGTGTTCAGAGCTCGGGCAGTCGCAGGTCCCAGTCGTCC
TCCCTACTGGACATGGGGAACATGTCTGCCTCTGACCTCGATGTGGCTGACAGAACCAAGTTTGATAAGA
TCTTTGAACAGGTGCTGAGTGAACTGGAGCCACTGTGTCTGGCAGAACAGGACTTCATAAGTAAATTTTT
CAAACTACAGCAGCATCAAAACATGTCTGCATCAATGACTGAAGCAGAAGACCTGGATGGAGGCTCGTTA
TTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGA
TCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTGCATTAGGAGACAAAGTAGATAGCTT
TAACTCCCTGTACATGCTGGTCAAAATGAGTCACCACGTGTGGACCGCACAGAACGTGGACCCAGCATCT
TTTCTAAGTACTACATTAGGAAACGTTTTGGTGACTGTGAAGAGGAACTTTGACAAATGCATTAGTAACC
AAATAAGACAAATGGAAGAAGTAAAGATCTCAAAGAAAAGTAAAGTAGGAATTCTTCCATTTGTTGCTGA
ATTTGAAGAATTTGCTGGGCTCGCAGAATCAATTTTCAAAAATGCTGAACGCCGTGGCGATCTGGACAAA
GCATACACCAAATTAATCAGAGGAGTGTTCATTAATGTGGAGAAAGTAGCAAATGAGAGCCAGAAGACGC
CCAGGGATGTGGTCATGATGGAGAACTTTCACCATATTTTTGCAACACTTTCTCGTCTGAAAATCTCATG
TCTTGAAGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGGATCACCTTCAGTCCTACGTCATTTACTCT
TTAGGACAGCCCCTTGAAAAGCTAAATCATTTCTTTGAAGGCGTTGAAGCTCGAGTAGCCCAGGGCATTC
GGGAGGAGGAGGTGAGCTACCAGCTTGCGTTCAACAAGCAAGAGCTTCGCAAAGTCATTAAAGAGTATCC
AGGCAAGGAGGTGAAGAAGGGCCTGGACAACCTCTACAAGAAGGTAGACAAGCACCTGTGTGAGGAGGAG
AACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATACGCCAGTACAAGCACTTCGAGGGGT
TGATAGCGCGCTGCTACCCTGGATCTGGAGTTACGATGGAATTCACTATTCAGGACATTCTGGATTATTG
CTCCAGCATCGCACAGTCCCACTAA

Translation (894 aa):
MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKKNCFLCATVTTERPVQVKVVKVKKSDKGDFYKRQIAW
ALRDLAVVDAKDAIKENPEFDLHFEKVYKWVASSTAEKNAFISCIWKLNQRYLRKKIDFVNVSSQLLEES
VPSGENQSVAGGDEEAVDEYQELNAREEQDIEIMMEGCECAISNAEAFAEKLSRELQVLDGANIQSIMAS
EKQVNTLMQLLDEALTEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLVNHM
DLAKGHIKALQEGDLVSSRGIEACTNAADALLQCMNVALRPGHDMLLAVKQQQQRFSDLREHFARRLASH
LNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDYLSRLYER
EIKDFFEVAKMKMTGTSKESKKFATLPRKESAVKQETESLHGSSGKLTGSTSSLNKLSVQSSGSRRSQSS
SLLDMGNMSASDLDVADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQNMSASMTEAEDLDGGSL
LRQHSSGTLLPVSSEKDMIRQMMIKIFRCIEPELNNLIALGDKVDSFNSLYMLVKMSHHVWTAQNVDPAS
FLSTTLGNVLVTVKRNFDKCISNQIRQMEEVKISKKSKVGILPFVAEFEEFAGLAESIFKNAERRGDLDK
AYTKLIRGVFINVEKVANESQKTPRDVVMMENFHHIFATLSRLKISCLEAEKKEAKQKYTDHLQSYVIYS
LGQPLEKLNHFFEGVEARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVDKHLCEEE
NLLQVVWHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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