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Report for CCDS71242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71242.1 Public Mus musculus 3 Elf2 23 108 98 CCDS HistoryNCBI Gene:69257Re-query CCDS DB by CCDS ID:71242.1Re-query CCDS DB by GeneID:69257See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062009.13 ENSMUSP00000061076.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062009.13Link to Ensembl Protein Viewer:ENSMUSP00000061076.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062009Re-query CCDS DB by Protein ID:ENSMUSP00000061076
Original member Current member NCBI NM_001291059.1 NP_001277988.1 Accepted alive Link to Nucleotide Sequence:NM_001291059.1Link to Protein Sequence:NP_001277988.1Re-query CCDS DB by Nucleotide ID:NM_001291059Re-query CCDS DB by Protein ID:NP_001277988Link to BLAST:NP_001277988.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277988.1 581 Q9JHC9-2 581 100% 0 0

Chromosomal Locations for CCDS 71242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51256361 51256985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51257425 51257775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51259172 51259364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51260999 51261085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51264869 51265006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51266753 51266866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51308050 51308215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51323222 51323293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGCATCGGCGGTGGTTGACAGCGGAGGCTCTGCTCTGGAGCTTCCTAGCGATGGAGGAGAAAATCAAG
AGGGAGGTGACACGGGCCCTGACTGCCCGGCAGTGATTGTGGAGCCAGTTCCCAGTGCGAGGTTAGAGCA
GGGCTATGCTGCCCAGGTGCTGGTCTATGACGACGAGACTTATATGATGCAGGATGTGGCGGAAGAACAG
GAAGTTGAGACGGAGAATTCAGAAACAGTGGAAGCATCAGTTCACAGCAGTAATGCTCACTGTACGGATA
AGACCATTGAAGCTGCTGAAGCCCTGCTTCATATGGAATCTCCTACCTGCTTGAGGGATTCAAGAAGTCC
TGAGTTTATCCATGCTGCGATGAGGCCGGATGTCATCACAGAGACTGTAGTGGAGGTGTCCACAGAAGAG
TCTGAGCCGATGGATGCCTCGCCTATCCCTACTTCACCAGACAGCCACGAACCAATGAAAAAGAAAAAAG
TTGGCCGTAAACCAAAGACCCAGCAGTCACCAGTTTCCAATGGGTCTCCTGAGTTAGGAATCAAGAAGAA
AGCCAGAGAAGGAAAAGGAAACACAACCTATCTGTGGGAGTTTCTTTTAGATTTGCTTCAAGATAAAAAT
ACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAGGGCATATTCAAACTTGTGGACTCAAAGGCTG
TCTCGAAGCTCTGGGGGAAGCATAAGAACAAACCAGATATGAACTATGAAACCATGGGGCGAGCGTTAAG
ATATTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGAGGCTTGTATATCAGTTCAAGGACATG
CCCAAAAACATAGTGGTCATTGATGATGACAAAAGTGAGACCTGCCCTGAAGACTTGGCAGCAGCTGCTG
ATGACAAGTCTTTAGAACGAGTGTCACTATCTGCAGAAAGTCTCCTGAAGGCAGCAACTGCCGTCCGAGG
TGGGAAAAACTCATCTCCTCTGAACTGCTCCAGAGCAGAGAAGGGTGTGGCTAGAGTTGTGAACATCACC
TCCCCTACTCACGACGGTTCCTCCAGGTCTCCTACTACCACTGCACCTGTGTCAGCAGCAGCAGCTCCAA
GGACAGTTCGTGTGGCAATGCAAGTCCCTGTGGTAATGACCTCACTGGGCCAAAAGATTTCAGCGGTGGC
AGTTCAGTCAGTCAATGCAGGCACAGGCTCGCCGTTAATAACCAGCACCAGTCCAGCCTCGGCCAGCTCT
CCAAAAGTAGTCATCCAGACAGTCCCGACCGTGATGCCGGCCTCCACTGAAAATGGAGACAGAATCACCA
TGCAGCCTGCCAAGATTATCACCATCCCCGCCACCCAGCTCGCACAGTGTCAACTCCAGGCAAAGTCAAA
CCTGACGGGGTCAGGAAGCATTAACATTGTTGGAACCCCACTGGCTGTGAGGGCACTCACCCCTGTTTCA
ATAGCCCACGGTACACCTGTAATGAGACTGTCTGTGCCTGCTCAGCAGGCTTCTGGCCAGACTCCTCCTC
GAGTTATCAGTGCGCTCCTAAAAGGGCCGGAGGGGAAATCAGAAGCCAAAAAGCAGGAACACGATGTGAA
AACTTTGCAGCTGGTAGAAGAGAAGGGGGCAGACGGCAATAAGACAGTAACCCACGTAGTGGTCGTCAGT
GCGCCGTCTGCTATCGCCCTTCCTGTGACTATGAAAACCGAAGGGCTAGTGACGTGTGAGAAATAA

Translation (581 aa):
MASAVVDSGGSALELPSDGGENQEGGDTGPDCPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQDVAEEQ
EVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEE
SEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKN
TCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDM
PKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPLNCSRAEKGVARVVNIT
SPTHDGSSRSPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISAVAVQSVNAGTGSPLITSTSPASASS
PKVVIQTVPTVMPASTENGDRITMQPAKIITIPATQLAQCQLQAKSNLTGSGSINIVGTPLAVRALTPVS
IAHGTPVMRLSVPAQQASGQTPPRVISALLKGPEGKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVS
APSAIALPVTMKTEGLVTCEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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