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Report for CCDS71114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71114.1 Public Mus musculus 2 Aqr 23 108 98 CCDS HistoryNCBI Gene:11834Re-query CCDS DB by CCDS ID:71114.1Re-query CCDS DB by GeneID:11834See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102543.4 ENSMUSP00000099602.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102543.4Link to Ensembl Protein Viewer:ENSMUSP00000099602.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102543Re-query CCDS DB by Protein ID:ENSMUSP00000099602
Original member NCBI NM_001290788.1 NP_001277717.1 Updated not alive Link to Nucleotide Sequence:NM_001290788.1Link to Protein Sequence:NP_001277717.1Re-query CCDS DB by Nucleotide ID:NM_001290788Re-query CCDS DB by Protein ID:NP_001277717
Current member NCBI NM_001290788.2 NP_001277717.1 Accepted alive Link to Nucleotide Sequence:NM_001290788.2Link to Protein Sequence:NP_001277717.1Re-query CCDS DB by Nucleotide ID:NM_001290788Re-query CCDS DB by Protein ID:NP_001277717Link to BLAST:NP_001277717.1

Chromosomal Locations for CCDS 71114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 114105200 114105361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114105800 114105974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114108104 114108189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114109884 114110054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114112482 114112653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114113219 114113406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114114580 114114651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114116523 114116660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114118677 114118898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114119910 114120045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114121205 114121314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114125891 114126001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114126956 114127025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114127513 114127659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114130535 114130776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114132967 114133136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114134652 114134819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114136870 114137048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114140869 114141010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114142988 114143108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114145628 114145730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114146889 114146992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114148939 114149052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114150399 114150515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114151519 114151583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114154965 114155041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114156247 114156347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114157540 114157608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114158870 114159010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114161564 114161684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114166193 114166228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114170027 114170067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114172691 114172747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114175092 114175166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4203 nt):
ATGGCGGCTCCTGCGCAGCCCAAGAAAATCGTGGCCCCCACGGTGTCCCAGATCAACGCGGAGTTCGTCA
CTCAGCTAGCATGTAAATACTGGGCTCCTCATATCAAGAAGAAATCACCGTTTGATATAAAAGTAATTGA
AGAAATATATGAAAAAGAGATCGTCAAATCACGGTTTGCCATCAGGAAAATAATGCTGCTGGAATTTAGC
CAATACCTTGAAAATTATCTTTGGATGAATTATTCTCCGGAAGTTTCCAGCAAGGCCTATTTAATGTCCA
TCTGCTGTATGGTGAATGAGAAGTTCAGAGAAAATGTCCCAGCCTGGGAGACCTTTAAGAAGAAACCAGA
CCACTTCCCATTCTTTTTTAAGTGCATCTTGAAAGCGGCCTTAGCTGAGACTGACGGCGAGTTCTCCCTC
CACGAGCAGACACTGCTCCTGCTTTTCCTGGATCACTGCTTCAATAGCTTGGAAGTAGACTTGATAAGGA
GTCAGGTGCAGCAGCTTATCTCGCTCCCGATGTGGATGGGCTTGCAGCCTGCACGATTGGAATTAGAATT
GAAAAAGACACCAAAGCTAAGAAAATTCTGGAACCTGATTAAAAAGAATGATGAAAAGATGGACCCAGAA
GCAAGAGAGCAGGCCTACCAAGAAAGAAGGTTTCTCTCCCGGCTCATCCAGAAGTTCATCTCCGTGTTGA
AGTCCATCCCGCTTTCTGAGCCTGTCACCATGGACAAGGTTCATTACTGTGAAAGATTCATCGAACTGAT
GATTGATCTAGAGGCTCTACTCCCCACGAGGCGCTGGTTTAACACCATCCTGGATGACTCCCACCTTCTG
GTTCACTGCTACCTCTCCAGTCTTGTTCACAGAGAAGAGGACGGCCATCTGTTTTCCCAGCTTTTAGACA
TGCTGAAGTTCTATACTGGCTTTGAGATTAACGACCAGACTGGAAATGCTCTGACAGAGAACGAGATGAC
CACGATTCACTATGACAGAATTACATCTCTGCAGAGGGCTGCCTTCGCACACTTCCCCGAGCTCTATGAC
TTTGCCCTCTCCAATGTGGCAGAAGTAGATGCCCGAGATTCCTTGGTCAAGTTTTTTGGGCCTCTCAGTT
CAAACACACTCCACCAGGTGGCATCATACCTCTGCCTCTTGCCAACGCTCCCTAAAAATGAAGACACAAC
TTTTGATAAAGAGTTTCTTCTAGAATTGCTGGTGTCTCGCCACGAACGCCGCATCTCTCAAATTCAGCAA
CTGAATCAGATGCCTTTGTATCCAACTGAGAAAATTATATGGGATGAGAACATCGTCCCTACTGAGTACT
ATTCTGGGGAAGGCTGCCTTGCTCTCCCCAAGTTGAATCTGCAGTTTTTGACTCTGCACGACTATCTCCT
GAGGAACTTCAATCTCTTCCGCTTAGAGTCAACTTACGAAATTAGACAAGACATCGAGGACAGTGTCAGC
AGAATGAAGCCCTGGCAGTCTGAGTATGGTGGCGTAGTGTTCGGTGGTTGGGCACGGATGGCCCAGCCCA
TTGTGGCTTTCACTGTAGTCGAGGTTGCCAAACCCAACATCGGTGAAAACTGGCCAACCCGAGTTCGTGC
AGATGTCACCATCAATCTGAATGTCAGAGACCACATCAAGGATGAGTGGGAAGGTCTTCGAAAGCACGAT
GTATGCTTTTTAATTACTGTGCGTCCAACAAAACCTTACGGCACTAAGTTTGACAGGAGGAGACCTTTTA
TTGAGCAAGTTGGTCTGGTGTACGTCAGAGGCTGTGAAATCCAGGGCATGCTGGATGACAAAGGGCGAGT
CATCGAAGACGGACCTGAACCCAGACCCAATCTTAGAGGAGAGTCAAGGACATTTCGAGTATTTTTGGAT
CCAAACCAGTATCAACAGGATATGACCAATACGATACAAAACGGAGCCGAAGATGTGTATGACACTTTCA
ATGTCATAATGAGGAGGAAACCGAAGGAGAATAACTTCAAGGCTGTGTTGGAGACGATTCGGAATCTGAT
GAATACTGACTGCGTGGTACCGGACTGGCTGCATGACATCATTTTGGGCTATGGGGACCCAAGTAGTGCC
CATTATTCAAAAATGCCCAATCAGATTGCCACCCTGGATTTCAATGACACTTTTCTCTCCATTGAACATT
TAAAGGCCAGCTTTCCTGGTCATAATGTCAAAGTGACTGTGAGTGACCCAGCACTCCAAATCCCCCCTTT
CAGAATAACGTTCCCAGTAAGAAGTGGAAAGGGGAAGAAAAGAAAAGATGCAGACGGGGAAGAAGATGAC
ACAGAAGAAGCAAAGACCTTAATTGTGGAGCCTCATGTTATTCCTAATAGAGGCCCTTATCCTTACAACC
AGCCCAAACGTAATACAATCCAGTTCACTCATACACAGATAGAGGCCATCCGGGCCGGAATGCAGCCTGG
ACTCACCATGGTTGTGGGCCCACCTGGTACAGGAAAAACAGATGTTGCAGTCCAGATCATATCCAACATT
TACCACAATTTCCCAGAACAGAGGACTTTAATTGTTACTCATTCCAATCAGGCTCTGAACCAGCTGTTTG
AGAAAATCATGGCTTTAGACATTGATGAGCGCCATCTCCTGCGTCTGGGTCATGGAGAAGAAGAGCTAGA
GACAGAGAAAGACTTTAGCAGGTATGGAAGAGTTAATTATGTCCTAGCTCGAAGAATAGAACTTTTAGAA
GAAGTCAAACGGTTACAAAAGAGTCTGGGGGTTCCCGGAGATGCTTCGTATACCTGTGAAACTGCCGGCT
ATTTCTTCTTATATCAGGTGATGTCCCGCTGGGAAGAATACATGAGCAGAGTGAAGAACTCGGGGACTGC
CTGCCCGGACGCTGCCCCGGACGCTGCACAGGTCGCCACGTTCTTCCCCTTCCATGAGTATTTTGCCAAT
GCTCCTCAGCCCATCTTTAAAGGCAGATCTTATGAGGAAGACATGGAAATCGCTGAAGGGTGCTTCAGGC
ACATTAAGAAAATCTTCACCCAACTTGAGGAGTTCAGAGCCTCGGAGCTGCTTCGCAGTGGACTGGACAG
ATCCAAATACCTCTTGGTAAAAGAAGCCAAAATCATCGCTATGACATGTACTCATGCTGCCTTGAAACGA
CACGACTTGGTCAAGTTGGGTTTCAAGTATGACAACATTTTAATGGAAGAGGCTGCTCAGATTCTGGAGA
TCGAAACCTTTATCCCTCTACTTCTGCAGAATCCTCAAGACGGATTCAGCCGATTGAAACGGTGGATTAT
GATTGGCGATCACCACCAATTGCCTCCAGTCATTAAGAACATGGCCTTTCAGAAGTATTCCAACATGGAG
CAGTCTCTTTTCACTCGCTTCGTCCGGGTTGGAGTTCCTACTGTGGACCTTGATGCTCAAGGGAGAGCCA
GGGCAAGCTTGTGTAACCTCTACAACTGGCGCTACAAAAACCTAGGGAATTTGCCCCATGTGCAGCTCCT
GCCAGAGTTCAGCACAGCCAACGCGGGCCTGCTGTATGACTTCCAGCTCATCAACGTGGAAGACTTTCAG
GGCGTGGGAGAGTCGGAGCCTAACCCTTACTTCTACCAGAACCTTGGAGAGGCAGAGTATGTAGTGGCGC
TCTTCATGTACATGTGCTTGCTTGGTTACCCTGCAGACAAGATCAGTATTCTAACAACCTACAATGGACA
GAAGCATCTGATTCGGGACATCATCAATAGGCGCTGTGGGAATAATCCACTGATTGGAAGGCCAAACAAA
GTGACAACAGTTGACAGATTCCAGGGTCAGCAGAACGATTATATCCTCCTTTCGCTAGTGCGGACCAGGG
CTGTGGGTCATCTGAGGGATGTGCGTCGCTTGGTGGTAGCCATGTCAAGAGCCAGGCTTGGCCTTTACAT
CTTCGCTCGAGTGTCCCTCTTCCAGAACTGCTTTGAACTGACTCCTGCTTTCAGCCAGCTCACTGCCCGC
CCACTGCATTTGCATATCATTCCAACAGAACCCTTCCCAACCTCCAGAAAGGCTCTTCCTTCTCCGGCAC
TTCTCTTGCCAGAGCTGCAGACACTGGATCATGCTCGGAGTGTGGCTGTTTTCTTCCAGCTGCAGAGTTC
ACTGTTCTGCTCTTTTCACTGGATGAAATGTCCCAGAGATCTAGGAAATTTCAATAAACAGACAGTTTTA
TAA

Translation (1400 aa):
MAAPAQPKKIVAPTVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEEIYEKEIVKSRFAIRKIMLLEFS
QYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWETFKKKPDHFPFFFKCILKAALAETDGEFSL
HEQTLLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQPARLELELKKTPKLRKFWNLIKKNDEKMDPE
AREQAYQERRFLSRLIQKFISVLKSIPLSEPVTMDKVHYCERFIELMIDLEALLPTRRWFNTILDDSHLL
VHCYLSSLVHREEDGHLFSQLLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAHFPELYD
FALSNVAEVDARDSLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQ
LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDIEDSVS
RMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTRVRADVTINLNVRDHIKDEWEGLRKHD
VCFLITVRPTKPYGTKFDRRRPFIEQVGLVYVRGCEIQGMLDDKGRVIEDGPEPRPNLRGESRTFRVFLD
PNQYQQDMTNTIQNGAEDVYDTFNVIMRRKPKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDPSSA
HYSKMPNQIATLDFNDTFLSIEHLKASFPGHNVKVTVSDPALQIPPFRITFPVRSGKGKKRKDADGEEDD
TEEAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNI
YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLE
EVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYMSRVKNSGTACPDAAPDAAQVATFFPFHEYFAN
APQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIAMTCTHAALKR
HDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNME
QSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQ
GVGESEPNPYFYQNLGEAEYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNK
VTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTAR
PLHLHIIPTEPFPTSRKALPSPALLLPELQTLDHARSVAVFFQLQSSLFCSFHWMKCPRDLGNFNKQTVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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