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Report for CCDS71014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71014.1 Public Mus musculus 2 Med27 23 108 98 CCDS HistoryNCBI Gene:68975Re-query CCDS DB by CCDS ID:71014.1Re-query CCDS DB by GeneID:68975See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113830.10 ENSMUSP00000109461.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113830.10Link to Ensembl Protein Viewer:ENSMUSP00000109461.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000113830Re-query CCDS DB by Protein ID:ENSMUSP00000109461
Original member Current member NCBI NM_029615.1 NP_083891.1 Accepted alive Link to Nucleotide Sequence:NM_029615.1Link to Protein Sequence:NP_083891.1Re-query CCDS DB by Nucleotide ID:NM_029615Re-query CCDS DB by Protein ID:NP_083891Link to BLAST:NP_083891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083891.1 208 Q9DB40-2 208 100% 0 0

Chromosomal Locations for CCDS 71014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29346845 29347047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29349846 29349990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29413388 29413518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29471293 29471386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29477333 29477386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGCGGACGTGCTGAGCGTTGGTGTGAACCTGGAGGCCTTTTCGCAGGCTATTAGCGCCATCCAGGCGC
TACGCTCTAGCGTGAGTAGGGTCTTCGACTGCCTTAAGGATGGCATGCGCAACAAAGAGACGCTGGAGGG
CCGCGAGAAGGCCTTCATCGCGAACTTCCAGGACAACTTGCATTCCGTCAACCGGGACCTCAATGAACTG
GAACGTTTGAGCAACCTGGTAGGCAAGCCGTCTGAGAACCACCCTCTTCATAACAGTGGGCTGCTAAGCC
TGGATCCTGTGCAGGACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCCAACAAGCT
GCAGTACCATGCAGGTCTAGCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCGCTCTGCAAATCAGATG
GGTGTGTCTGCCAAGCGGAGACCGAAGGCCCAGCCCACCACTCTGGTTCTACCACCTCAGTATGTCGATG
ACGTGATCAGCCGCATTGACAGAATGTTTCCAGAGATGTCCATTCACTTATCGAGACCCAATGGGACTTC
AGCAATGCTTCTGATTCTTATAAACAGCTCTGCTCAGAGCATTACTGGCCCTTGGTTTTGGTCCTGA

Translation (208 aa):
MADVLSVGVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIANFQDNLHSVNRDLNEL
ERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASGLLNQQSLKRSANQM
GVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIHLSRPNGTSAMLLILINSSAQSITGPWFWS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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