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Report for CCDS70188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70188.1 Public Mus musculus 11 Tnip1 23 108 98 CCDS HistoryNCBI Gene:57783Re-query CCDS DB by CCDS ID:70188.1Re-query CCDS DB by GeneID:57783See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102730.8 ENSMUSP00000099791.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102730.8Link to Ensembl Protein Viewer:ENSMUSP00000099791.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102730Re-query CCDS DB by Protein ID:ENSMUSP00000099791
Original member Current member NCBI NM_001271456.1 NP_001258385.1 Accepted alive Link to Nucleotide Sequence:NM_001271456.1Link to Protein Sequence:NP_001258385.1Re-query CCDS DB by Nucleotide ID:NM_001271456Re-query CCDS DB by Protein ID:NP_001258385Link to BLAST:NP_001258385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258385.1 646 Q9WUU8-3 646 99.8452% 0 1

Chromosomal Locations for CCDS 70188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54911466 54911497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54915497 54915587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54916796 54916987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54917256 54917321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54917800 54917925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54918606 54918737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54920761 54920889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54924098 54924229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54924376 54924441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54926704 54926793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54929095 54929218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54930765 54930859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54933989 54934180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54936461 54936541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54937947 54938065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54939598 54939735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54940711 54940846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGAAGGGAGAGGACCCTACGGGATCTACGACCCAGGGGGCAGCACGCCTCTGGGAGAGGTGTCCGCAG
CTTTTGAACGTCTAGTGGAGGAGAATACTCGGCTGAAGGGAAAAATGCAAGGGATAAAGATGTTAGGGGA
GCTTCTGGAGGAGTCTCAGATGGAAGCGTCCAGACTCCGGCAGAAGGCAGAGGAGCTGGTCAAGGACAGC
GAGCTGTCACCACCGACATCTGCCCCCTCCTTGGTCTCCTTTGATGACCTGGCTGAGCTCACAGGACAGG
ATACAAAGGTCCAGGTACATCCTGCTACCAGCACTGCCGCCACCACCACCGCCACCGCCACCACGGGAAA
CTCCATGGAGAAGCCCGAGCCAGCCTCCAAATCTCCGTCCAATGGCGCCTCCTCGGACTTTGAAGTGGTC
CCTACTGAGGAGCAGAATTCACCCGAAACTGGCAGCCACCCTACGAACATGATGGACCTGGGGCCCCCAC
CCCCAGAGGACAGCAACCTGAAGCTCCACCTGCAGCGCCTGGAGACCACCCTTAGCGTGTGTGCAGAGGA
GCCAGACCACAGCCAGCTCTTCACCCACCTGGGCCGCATGGCCCTCGAGTTCAACAGGTTGGCCTCCAAA
GTGCATAAAAATGAGCAGCGCACCTCCATCCTGCAGACCTTATGTGAGCAGCTGCGCCAGGAGAATGAAG
CCCTGAAGGCCAAGCTGGACAAGGGCCTGGAACAGCGGGATCTGGCTGCTGAGAGGCTGCGGGAGGAAAA
CACGGAGCTCAAGAAACTGTTGATGAACAGCAGCTGCAAAGAGGGACTCTGTGGGCAGCCCAGCTCCCCA
AAGCCAGAGGGTGCTGGCAAGAAGGGCGTGGCTGGACAGCAGCAGGCCAGTGTGATGGCGAGTAAAGTCC
CTGAAGCGGGGGCCTTTGGAGCAGCTGAGAAGAAGGTGAAGTTGCTAGAACAGCAACGCATGGAGCTGCT
GGAAGTGAACAAGCAGTGGGACCAGCATTTCCGGTCCATGAAGCAGCAGTATGAGCAGAAGATCACAGAG
CTTCGCCAGAAGCTGGTGGACCTGCAGAAACAGGTAACTGAGCTGGAGGCCGAACGGGAGCAGAAGCAGC
GTGACTTTGACCGGAAACTCCTCCTGGCCAAATCGAAGATAGAGATGGAAGAGACCGACAAGGAGCAGCT
GACAGCAGAGGCCAAGGAACTGCGCCAGAAGGTCAGGTACCTACAGGATCAGCTGAGCCCGCTCACAAGG
CAACGAGAATACCAGGAGAAGGAGATCCAGCGGCTCAATAAGGCCCTGGAGGAGGCCCTCAGCATCCAGG
CCTCTCCATCATCTCCGCCTGCAGCTTTTGGGAGTCCAGAAGGCGTTGGGGGCCATCTGAGGAAGCAGGA
ACTAGTGACACAGAATGAGTTGCTGAAACAGCAGGTAAAGATCTTTGAAGAGGACTTCCAGAGGGAACGG
AGTGACCGTGAACGCATGAATGAAGAGAAGGAGGAGCTGAAGAAGCAAGTAGAGAAGCTGCAGGCCCAGG
TCACCCTGACTAATGCCCAGCTCAAAACTCTCAAAGAGGAGGAGAAGGCCAAGGAAGCCCTCAAACAGCA
GAAGAGGAAAGCAAAGGCTTCGGGAGAGCGCTACCACATGGAACCCCACCCTGAGCACGTCTGCGGCGCC
TATCCCTATGCCTACCCACCCATGCCAGCCATGGTACCTCACCATGCCTACAAGGACTGGTCCCAGATCC
GATACCCTCCACCCCCTGTGCCCATGGAGCACCCGCCCCCACACCCCAACTCTCGCCTCTTCCATCTGCC
GGAGTACACCTGGCGTCCACCCTGTGCAGGGATTCGGAATCAGAGCTCTCAAGTGATGGACCCGCCCCCA
GACAGGCCTGCAGAGCCAGAGCCAGCTGACCTCAGATTGCCAAAAGTTTGA

Translation (646 aa):
MEGRGPYGIYDPGGSTPLGEVSAAFERLVEENTRLKGKMQGIKMLGELLEESQMEASRLRQKAEELVKDS
ELSPPTSAPSLVSFDDLAELTGQDTKVQVHPATSTAATTTATATTGNSMEKPEPASKSPSNGASSDFEVV
PTEEQNSPETGSHPTNMMDLGPPPPEDSNLKLHLQRLETTLSVCAEEPDHSQLFTHLGRMALEFNRLASK
VHKNEQRTSILQTLCEQLRQENEALKAKLDKGLEQRDLAAERLREENTELKKLLMNSSCKEGLCGQPSSP
KPEGAGKKGVAGQQQASVMASKVPEAGAFGAAEKKVKLLEQQRMELLEVNKQWDQHFRSMKQQYEQKITE
LRQKLVDLQKQVTELEAEREQKQRDFDRKLLLAKSKIEMEETDKEQLTAEAKELRQKVRYLQDQLSPLTR
QREYQEKEIQRLNKALEEALSIQASPSSPPAAFGSPEGVGGHLRKQELVTQNELLKQQVKIFEEDFQRER
SDRERMNEEKEELKKQVEKLQAQVTLTNAQLKTLKEEEKAKEALKQQKRKAKASGERYHMEPHPEHVCGA
YPYAYPPMPAMVPHHAYKDWSQIRYPPPPVPMEHPPPHPNSRLFHLPEYTWRPPCAGIRNQSSQVMDPPP
DRPAEPEPADLRLPKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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