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Report for CCDS70095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70095.1 Public Mus musculus 10 Apaf1 23 108 98 CCDS HistoryNCBI Gene:11783Re-query CCDS DB by CCDS ID:70095.1Re-query CCDS DB by GeneID:11783See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162618.7 ENSMUSP00000124134.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162618.7Link to Ensembl Protein Viewer:ENSMUSP00000124134.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162618Re-query CCDS DB by Protein ID:ENSMUSP00000124134
Original member NCBI NM_001282947.1 NP_001269876.1 Updated not alive Link to Nucleotide Sequence:NM_001282947.1Link to Protein Sequence:NP_001269876.1Re-query CCDS DB by Nucleotide ID:NM_001282947Re-query CCDS DB by Protein ID:NP_001269876
Current member NCBI NM_001282947.2 NP_001269876.1 Accepted alive Link to Nucleotide Sequence:NM_001282947.2Link to Protein Sequence:NP_001269876.1Re-query CCDS DB by Nucleotide ID:NM_001282947Re-query CCDS DB by Protein ID:NP_001269876Link to BLAST:NP_001269876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269876.1 1238 O88879-2 1238 99.9192% 0 1

Chromosomal Locations for CCDS 70095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 90991450 90991596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90995648 90995794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90997212 90997337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90999652 90999777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91001010 91001129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91009124 91009249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91014060 91014176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91018966 91019085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91020656 91020781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91023720 91023848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91031549 91031710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91036910 91037035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91039785 91039916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91048086 91048211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91049358 91049484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91054380 91054564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91055915 91056028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91058311 91058442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91059573 91059740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91060048 91060286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91061698 91061829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91062104 91062216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91067081 91067264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91077534 91077731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91079480 91079636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91079887 91080024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3717 nt):
ATGGATGCAAAGGCCCGCAATTGTTTGCTTCAACATAGAGAAGCTTTGGAAAAGGACATCAAAACATCCT
ACATCATGGATCACATGATCAGTAATGGCGTCTTGTCAGTGATAGAGGAGGAGAAGGTCAAAAGTCAGGC
CACTCAATATCAACGAGCAGCCGCTTTAATTAAAATGATACTTAATAAAGACAACTGTGCCTACATTTCA
TTCTACAACGCTCTGCTACACGAGGGCTATAAGGACCTTGCTGCGCTTCTGCAGAGTGGCCTTCCTCTTG
TGTCGTCTTCCAGTGTAAGGACAGTGCTGTGTGAAGGTGGAGTACCCCAGAGGCCGGTTATTTTCGTTAC
TAGAAAGAAGCTGGTTCATGCGATTCAGCAGAAGCTCTGGAAACTGAATGGAGAACCAGGGTGGGTCACC
ATCTATGGGATGGCAGGCTGCGGCAAGTCTGTGTTAGCTGCGGAAGCCGTTCGAGATCACTCCCTCTTAG
AAGGTTGCTTTTCAGGGGGTGTACACTGGGTTTCCATTGGAAAACAAGACAAATCTGGGCTTCTCATGAA
ACTGCAGAATCTGTGCATGCGCTTGGACCAAGAAGAGAGTTTCTCTCAGAGGCTTCCACTTAATATTGAG
GAGGCCAAAGACCGCCTCCGTGTTCTGATGCTGCGCAAACACCCAAGGTCTCTGTTGATCTTGGATGATG
TTTGGGATCCTTGGGTGTTAAAAGCTTTTGACAATCAGTGTCAGATTCTTCTTACAACCAGAGATAAGAG
TGTTACAGATTCAGTAATGGGTCCTAAGCATGTTGTCCCTGTGGAGAGTGGTCTAGGGAGAGAGAAAGGA
CTTGAGATCTTGTCACTTTTTGTTAACATGAAGAAAGAAGATCTGCCAGCGGAGGCTCACAGTATTATAA
AGGAATGCAAAGGTTCTCCTCTTGTAGTGTCTTTAATTGGTGCGCTTTTACGTGATTTTCCCAATCGCTG
GGCATACTACCTCAGACAGCTTCAGAATAAGCAGTTTAAGAGAATAAGGAAGTCTTCATCTTATGATTAT
GAGGCTCTAGATGAAGCCATGTCGATAAGTGTTGAAATGCTCAGAGAAGACATCAAAGACTATTACACAG
ACCTTTCCATCCTTCAGAAGGACGTCAAGGTACCTACAAAGGTGTTGTGCGTTCTCTGGGACTTGGAAAC
GGAAGAAGTTGAAGACATCCTGCAGGAGTTCGTTAATAAGTCTCTCTTATTCTGTAATCGGAATGGAAAG
TCATTTTGTTATTATTTACATGATCTTCAAGTAGATTTTCTTACAGAGAAGAATCGCAGTCAGCTTCAGG
ATCTGCACAGGAAGATGGTCACTCAGTTTCAGAGGTATTACCAGCCCCACACGCTGTCTCCAGACCAGGA
GGACTGCATGTATTGGTACAACTTCCTAGCCTATCACATGGCTAGTGCCAATATGCACAAAGAACTTTGT
GCTTTAATGTTTTCCCTGGACTGGATTAAAGCAAAAACAGAACTTGTCGGCCCTGCCCATCTGATTCACG
AGTTCGTGGCATATAGGCATATATTGGATGAAAAGGATTGTGCAGTCTGTGAGAATTTTCAAGAGTTTTT
ATCTTTAAATGGACACCTCCTTGGACGACAGCCATTTCCTAATATTGTACAGCTGGGCCTCTGTGAACCA
GAAACTTCCGAAGTTTATCGACAAGCAAAGCTGCAGGCCAAGCAGGAGGGGGATACTGGGCGCCTTTACC
TGGAATGGATAAACAAAAAAACTATCAAGAATCTGTCCCGCTTAGTCGTCCGCCCCCACACAGATGCTGT
TTACCACGCGTGTTTTTCTCAGGATGGTCAGAGAATAGCTTCTTGTGGGGCTGATAAAACCTTACAGGTG
TTCAAAGCCGAGACAGGAGAGAAACTTCTTGACATCAAAGCTCACGAAGATGAGGTGCTTTGCTGCGCGT
TCTCCTCAGACGACAGTTACATAGCGACCTGCTCAGCGGATAAGAAGGTTAAGATTTGGGATTCTGCGAC
TGGGAAGCTTGTGCACACCTACGACGAGCACTCGGAGCAAGTCAATTGCTGCCATTTCACCAACAAGAGT
AACCACCTTCTCTTGGCCACTGGGTCAAATGATTTCTTCCTCAAGCTCTGGGATTTGAATCAAAAAGAAT
GTCGAAATACCATGTTTGGTCACACGAACTCAGTCAACCACTGCAGGTTCTCACCAGACGATGAGCTCTT
GGCTAGCTGCTCAGCTGACGGGACTTTAAGGCTTTGGGATGTGAGATCAGCAAACGAGAGGAAAAGCATT
AATGTGAAGCGCTTCTTCCTGAGTTCAGAAGACCCTCCAGAGGATGTGGAGGTGATCGTGAAGTGTTGTT
CCTGGTCTGCAGATGGTGACAAAATAATAGTGGCAGCAAAAAACAAAGTCCTCCTTTTTGATATTCATAC
TAGTGGCCTATTGGCAGAGATCCACACAGGCCATCACAGCACCATCCAGTACTGTGACTTCTCCCCCTAT
GACCATTTGGCTGTGATTGCCCTGTCTCAGTACTGTGTGGAGTTGTGGAACATAGACTCCCGCCTAAAGG
TGGCCGACTGCAGAGGACATTTGAGTTGGGTTCACGGTGTGATGTTTTCTCCCGATGGCTCCTCATTTTT
GACAGCTTCTGATGACCAAACAATAAGGGTCTGGGAGACAAAAAAGGTATGCAAGAACTCTGCCATCGTG
CTAAAGCAGGAAATAGACGTCGTGTTTCAAGAGAACGAAACGATGGTCCTTGCAGTTGACAACATAAGAG
GCCTGCAACTCATTGCTGGAAAAACAGGCCAGATTGATTACCTGCCTGAAGCCCAAGTGAGTTGCTGCTG
CCTCAGTCCACACCTTGAGTACGTGGCATTCGGAGATGAAGATGGAGCCATTAAGATTATAGAACTTCCA
AACAACAGAGTCTTCAGTTCTGGGGTTGGGCACAAGAAAGCTGTGCGGCACATCCAGTTCACAGCTGATG
GGAAGACACTGATTTCAAGTTCTGAAGATTCTGTGATTCAGGTATGGAATTGGCAGACAGGGGACTATGT
ATTTTTGCAAGCCCACCAGGAAACGGTAAAGGACTTCAGGCTCCTCCAAGATTCAAGATTGCTTTCTTGG
TCATTTGATGGAACGGTGAAGGTGTGGAATGTCATTACCGGAAGAATAGAAAGAGACTTTACTTGTCATC
AGGGCACAGTGCTTTCCTGTGCTATCTCTTCTGATGCGACCAAGTTTTCATCTACCTCTGCTGATAAGAC
TGCCAAGATCTGGAGTTTTGACCTCCTTTCCCCTCTTCATGAGCTGAAGGGCCATAATGGCTGTGTCCGC
TGCTCTGCCTTCTCGCTGGATGGCATCCTGTTGGCAACTGGAGATGACAATGGAGAAATCCGGATATGGA
ATGTCTCAGATGGCCAGCTTCTTCATTCGTGTGCTCCGATCTCGGTAGAGGAAGGAACTGCTACCCACGG
CGGCTGGGTAACTGATGTGTGCTTCTCTCCCGACAGTAAAACGCTTGTCTCTGCTGGAGGATATCTCAAG
TGGTGGAATGTTGCCACTGGGGACTCCTCACAGACCTTCTACACAAATGGAACAAACCTCAAGAAAATCC
ACGTGTCCCCTGACTTCAGAACCTATGTGACTGTCGATAATCTCGGTATTTTATATATTTTACAGGTTTT
AGAGTGA

Translation (1238 aa):
MDAKARNCLLQHREALEKDIKTSYIMDHMISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYIS
FYNALLHEGYKDLAALLQSGLPLVSSSSVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVT
IYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIE
EAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKG
LEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDY
EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGK
SFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASANMHKELC
ALMFSLDWIKAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPFPNIVQLGLCEP
ETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQV
FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS
NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI
NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY
DHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV
LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP
NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW
SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR
CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLK
WWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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