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Report for CCDS6917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6917.1 Public Homo sapiens 9 MIGA2 24 110 108 CCDS HistoryNCBI Gene:84895Re-query CCDS DB by CCDS ID:6917.1Re-query CCDS DB by GeneID:84895See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358369.8 ENSP00000351138.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358369.8Link to Ensembl Protein Viewer:ENSP00000351138.4Re-query CCDS DB by Nucleotide ID:ENST00000358369Re-query CCDS DB by Protein ID:ENSP00000351138
Original member Current member EBI ENST00000684074.1 ENSP00000506871.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684074.1Link to Ensembl Protein Viewer:ENSP00000506871.1Re-query CCDS DB by Nucleotide ID:ENST00000684074Re-query CCDS DB by Protein ID:ENSP00000506871
Original member Current member NCBI NM_001329990.2 NP_001316919.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001329990.2Link to Protein Sequence:NP_001316919.1Re-query CCDS DB by Nucleotide ID:NM_001329990Re-query CCDS DB by Protein ID:NP_001316919Link to BLAST:NP_001316919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316919.1 593 Q7L4E1-1 593 100% 0 0

Chromosomal Locations for CCDS 6917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 129040595 129040690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129042304 129042514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129048427 129048539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129049381 129049498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129049827 129049963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129059154 129059271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129060550 129060650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129061231 129061346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129063244 129063316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129063545 129063631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129067773 129067871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129068198 129068332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129069076 129069129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129069849 129069965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129070247 129070453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCGTTCCGGAGGGCCGAGGGCACGTCTATGATCCAGGCCCTGGCCATGACGGTGGCCGAGATCCCCG
TGTTCCTGTACACGACGTTTGGGCAGTCTGCATTCTCCCAGCTACGGTTGACGCCAGGCCTGCGGAAAGT
CCTCTTTGCCACGGCCCTGGGGACTGTGGCCCTGGCCCTGGCTGCCCACCAGCTGAAGAGGCGACGGAGG
AGGAAGAAGCAGGTTGGTCCCGAGATGGGAGGGGAGCAGCTGGGCACGGTGCCCCTCCCTATCCTCTTGG
CCAGGAAGGTCCCTTCAGTGAAGAAAGGATACTCCAGCCGGAGAGTCCAGAGCCCCAGCAGCAAGAGCAA
CGACACCCTGAGTGGCATCTCTTCCATTGAGCCCAGCAAGCACTCGGGCTCCTCCCACAGTGTGGCCTCG
ATGATGGCAGTGAACTCATCCAGCCCCACAGCCGCGTGCTCGGGACTATGGGATGCCAGAGGGATGGAGG
AGTCTCTGACCACCAGCGACGGCAATGCAGAGAGCCTGTACATGCAAGGCATGGAGCTGTTTGAGGAAGC
TCTGCAGAAGTGGGAGCAGGCACTAAGCGTGGGCCAGCGGGGGGACAGCGGCAGCACCCCCATGCCCAGG
GACGGCCTCCGGAACCCAGAGACTGCATCAGAGCCACTGTCTGAGCCAGAGTCACAGCGGAAGGAGTTTG
CAGAGAAGCTGGAGTCCCTGCTGCACCGTGCCTACCACCTGCAGGAGGAGTTCGGCTCCACCTTCCCCGC
AGACAGCATGCTGCTAGACCTCGAGAGGACCCTCATGCTGCCCCTGACCGAGGGCTCGCTGCGGCTGCGG
GCGGACGATGAGGACAGCCTGACTTCAGAGGATTCCTTCTTCTCCGCCACCGAGCTCTTTGAGTCCCTGC
AGACTGGAGATTACCCGATCCCACTCTCCAGACCCGCCGCTGCCTATGAGGAGGCCCTGCAGCTGGTGAA
GGAGGGGAGAGTGCCTTGCCGGACCCTCAGGACGGAGCTGCTGGGCTGCTACAGTGACCAGGACTTTCTG
GCCAAGCTGCACTGTGTGCGGCAGGCCTTCGAGGGGCTTCTGGAAGACAAGAGTAACCAGCTTTTCTTCG
GGAAAGTGGGCCGACAGATGGTGACAGGCCTGATGACCAAGGCTGAGAAGAGCCCCAAAGGCTTCCTGGA
GAGCTACGAGGAGATGCTGAGCTATGCCCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGAG
GGCCGAGGGGTGGTATGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGACGCCTTCGAGG
ACCTGGAGAACCCTCCGGCCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGACAGCTTCAAGGA
GACGGCCTTGGCCACTGCTTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATGGTGCCTGATGGC
TTCATCTCCCATTTCTACTCCGTATCGGAGCATGTGAGCCCTGTCCTAGCCTTCGGCTTCCTTGGACCCA
AGCCTCAGCTTGCTGAAGTCTGTGCTTTCTTCAAGCACCAGATTGTGCAGTACCTGAGGGACATGTTCGA
CCTGGACAATGTGCGCTACACGTCACTGCCCGCGCTGGCAGACGACATCCTGCAGCTGTCCCGGCGCCGC
AGCGAGATATTGCTGGGGTACCTGGGGGTGCCCGCGGCCAGCAGCGCAGGCGTGAATGGGGCGCTGCCCC
GAGAGAATGGGCCCCTGGGGGAGCTGCAGTAG

Translation (593 aa):
MAFRRAEGTSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQLKRRRR
RKKQVGPEMGGEQLGTVPLPILLARKVPSVKKGYSSRRVQSPSSKSNDTLSGISSIEPSKHSGSSHSVAS
MMAVNSSSPTAACSGLWDARGMEESLTTSDGNAESLYMQGMELFEEALQKWEQALSVGQRGDSGSTPMPR
DGLRNPETASEPLSEPESQRKEFAEKLESLLHRAYHLQEEFGSTFPADSMLLDLERTLMLPLTEGSLRLR
ADDEDSLTSEDSFFSATELFESLQTGDYPIPLSRPAAAYEEALQLVKEGRVPCRTLRTELLGCYSDQDFL
AKLHCVRQAFEGLLEDKSNQLFFGKVGRQMVTGLMTKAEKSPKGFLESYEEMLSYALRPETWATTRLELE
GRGVVCMSFFDIVLDFILMDAFEDLENPPASVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMVPDG
FISHFYSVSEHVSPVLAFGFLGPKPQLAEVCAFFKHQIVQYLRDMFDLDNVRYTSLPALADDILQLSRRR
SEILLGYLGVPAASSAGVNGALPRENGPLGELQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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