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Report for CCDS6748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6748.1 Public Homo sapiens 9 TEX10 24 110 108 CCDS HistoryNCBI Gene:54881Re-query CCDS DB by CCDS ID:6748.1Re-query CCDS DB by GeneID:54881See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374902.9 ENSP00000364037.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374902.9Link to Ensembl Protein Viewer:ENSP00000364037.4Re-query CCDS DB by Nucleotide ID:ENST00000374902Re-query CCDS DB by Protein ID:ENSP00000364037
Original member Current member NCBI NM_017746.4 NP_060216.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017746.4Link to Protein Sequence:NP_060216.2Re-query CCDS DB by Nucleotide ID:NM_017746Re-query CCDS DB by Protein ID:NP_060216Link to BLAST:NP_060216.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060216.2 929 Q9NXF1-1 929 100% 0 0

Chromosomal Locations for CCDS 6748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100302191 100302304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100303632 100303842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100308500 100308681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100310299 100310379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100320265 100320398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100321683 100321771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100326302 100326479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100327787 100327962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100329140 100329275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100329931 100330169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100340257 100340369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100346072 100346315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100346694 100347406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100349184 100349363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGACTAAAAAAAGAAAACGCCAACATGATTTTCAAAAAGTAAAATTGAAAGTTGGTAAAAAGAAGCCCA
AGTTACAAAATGCTACTCCTACAAACTTTAAAACAAAGACTATACATCTGCCTGAGCAACTCAAAGAGGA
TGGAACACTTCCAACAAACAATAGAAAACTTAACATAAAGGATTTGCTGTCACAGATGCATCACTACAAT
GCTGGGGTTAAACAAAGTGCTCTTCTTGGACTTAAAGACCTTTTGTCTCAATACCCATTTATAATTGATG
CACACCTTTCAAACATATTAAGTGAAGTGACTGCTGTGTTTACAGATAAAGATGCTAATGTACGATTAGC
AGCAGTTCAACTTCTTCAATTCCTGGCCCCCAAAATACGAGCTGAACAAATTTCTCCATTTTTTCCTTTG
GTAAGTGCCCATCTCTCTAGTGCCATGACTCACATTACTGAAGGAATTCAGGAGGACTCTTTAAAAGTTT
TGGACATTCTGCTGGAACAGTACCCAGCTCTAATTACTGGCCGTAGCAGCATATTGCTTAAGAATTTTGT
AGAACTTATTTCTCATCAGCAGCTGTCCAAAGGACTGATAAATAGAGACAGATCCCAGTCCTGGATACTT
TCTGTAAATCCTAATCGGAGACTCACTTCTCAGCAATGGAGGCTGAAAGTCTTAGTGAGACTCAGTAAAT
TCCTTCAGGCCTTGGCAGATGGATCCAGTAGGTTGAGAGAAAGTGAAGGACTTCAGGAACAGAAAGAAAA
TCCCCATGCCACTAGCAACTCCATTTTTATCAACTGGAAGGAACATGCCAACGACCAGCAACACATCCAG
GTTTATGAAAATGGGGGTTCACAGCCAAATGTCAGTTCACAGTTCAGGCTACGGTATCTGGTTGGAGGAC
TGAGTGGTGTGGATGAAGGCCTGTCATCTACTGAAAACCTGAAAGGATTTATTGAGATAATAATTCCATT
GCTAATTGAATGCTGGGTTGAAGCTGTACCTCCACAACTAGCTACTCCTGTTGGGAATGGTATAGAACGA
GAACCTCTACAGGTTATGCAGCAAGTTCTTAATATTATTTCCCTTCTGTGGAAACTCTCTAAACAACAGG
ATGAAACCCATAAATTGGAGTCATGGCTTCGAAAGAACTACCTTATTGATTTTAAACACCATTTTATGAG
TCGTTTTCCATATGTCTTAAAAGAAATAACCAAGCACAAAAGGAAAGAGCCAAATAAAAGCATCAAGCAT
TGCACAGTTCTCTCCAATAACATAGATCATCTCTTACTGAATTTAACACTGTCTGATATCATGGTCTCCC
TGGCAAATGCGTCAACTTTGCAGAAGGATTGCAGTTGGATAGAAATGATAAGGAAATTTGTAACAGAGAC
CCTTGAAGATGGCTCTAGGCTAAATAGTAAGCAACTGAACAGATTGCTGGGAGTATCCTGGAGGTTAATG
CAAATACAGCCAAACAGAGAGGACACAGAGACTCTTATTAAGGCAGTTTATACATTATATCAGCAGAGGG
GCCTTATCCTTCCAGTTCGGACTTTGTTATTGAAGTTTTTCAGTAAAATCTATCAGACAGAAGAACTGAG
ATCTTGTAGATTCAGATATCGTAGTAAAGTGTTATCCCGTTGGCTGGCTGGCTTACCATTGCAACTTGCT
CATCTTGGCTCCCGAAATCCTGAGCTCTCTACACAGCTTATCGATATCATTCATACCGCTGCAGCACGAG
CAAATAAAGAATTACTAAAAAGTTTACAAGCTACTGCCCTCCGAATTTATGATCCACAAGAAGGTGCTGT
GGTGGTTCTCCCTGCAGACTCTCAGCAGCGTTTGGTTCAGCTTGTATATTTCCTACCCAGTCTGCCGGCT
GATTTGCTTTCTCGGTTAAGTCGTTGCTGTATTATGGGAAGACTCAGTTCAAGTTTGGCTGCCATGCTTA
TCGGGATACTGCACATGAGATCATCATTTTCTGGGTGGAAGTATTCAGCTAAAGACTGGTTGATGAGTGA
TGTAGACTATTTCAGCTTCTTATTTTCCACACTTACAGGGTTTTCGAAAGAGGAGTTGACTTGGCTTCAG
AGCCTTCGAGGAGTTCCTCATGTCATCCAGACACAGCTTTCCCCTGTGCTTCTCTACCTTACAGATTTGG
ATCAATTTTTACACCACTGGGATGTAACAGAGGCAGTTTTTCACAGTTTATTGGTTATTCCTGCCCGAAG
TCAGAACTTTGACATCTTGCAAAGTGCCATCAGTAAGCATTTGGTTGGGTTGACTGTAATTCCTGACAGC
ACGGCTGGCTGTGTTTTTGGTGTTATCTGTAAGCTCCTGGATCATACTTGTGTAGTTAGTGAGACTCTAC
TGCCATTTCTGGCTTCTTGTTGCTACAGTCTTCTTTATTTTCTGCTCACTATAGAGAAAGGGGAAGCAGA
ACATCTAAGAAAGAGGGACAAGCTGTGGGGGGTCTGTGTCTCCATCCTGGCTCTCTTGCCTCGAGTCCTC
AGGTTGATGCTGCAGAGCCTGCGGGTGAACAGAGTTGGGCCTGAGGAGCTGCCTGTTGTGGGCCAGCTGC
TTCGACTGCTGCTTCAGCATGCACCCCTCAGGACTCATATGTTGACCAATGCGATCTTGGTGCAGCAGAT
CATCAAGAATATCACGACATTGAAGAGTGGAAGTGTTCAGGAACAGTGGCTCACAGACTTACATTACTGC
TTCAACGTGTATATCACTGGGCATCCCCAAGGGCCCAGTGCACTGGCTACAGTGTATTGA

Translation (929 aa):
MTKKRKRQHDFQKVKLKVGKKKPKLQNATPTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYN
AGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPL
VSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLINRDRSQSWIL
SVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQ
VYENGGSQPNVSSQFRLRYLVGGLSGVDEGLSSTENLKGFIEIIIPLLIECWVEAVPPQLATPVGNGIER
EPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRFPYVLKEITKHKRKEPNKSIKH
CTVLSNNIDHLLLNLTLSDIMVSLANASTLQKDCSWIEMIRKFVTETLEDGSRLNSKQLNRLLGVSWRLM
QIQPNREDTETLIKAVYTLYQQRGLILPVRTLLLKFFSKIYQTEELRSCRFRYRSKVLSRWLAGLPLQLA
HLGSRNPELSTQLIDIIHTAAARANKELLKSLQATALRIYDPQEGAVVVLPADSQQRLVQLVYFLPSLPA
DLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKYSAKDWLMSDVDYFSFLFSTLTGFSKEELTWLQ
SLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTEAVFHSLLVIPARSQNFDILQSAISKHLVGLTVIPDS
TAGCVFGVICKLLDHTCVVSETLLPFLASCCYSLLYFLLTIEKGEAEHLRKRDKLWGVCVSILALLPRVL
RLMLQSLRVNRVGPEELPVVGQLLRLLLQHAPLRTHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYC
FNVYITGHPQGPSALATVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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