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Report for CCDS62353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62353.1 Public Homo sapiens 17 TBC1D16 24 110 108 CCDS HistoryNCBI Gene:125058Re-query CCDS DB by CCDS ID:62353.1Re-query CCDS DB by GeneID:125058See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576768.5 ENSP00000461522.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576768.5Link to Ensembl Protein Viewer:ENSP00000461522.1Re-query CCDS DB by Nucleotide ID:ENST00000576768Re-query CCDS DB by Protein ID:ENSP00000461522
Original member Current member NCBI NM_001271844.2 NP_001258773.1 Accepted alive Link to Nucleotide Sequence:NM_001271844.2Link to Protein Sequence:NP_001258773.1Re-query CCDS DB by Nucleotide ID:NM_001271844Re-query CCDS DB by Protein ID:NP_001258773Link to BLAST:NP_001258773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258773.1 392 Q8TBP0-4 392 100% 0 0

Chromosomal Locations for CCDS 62353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79940859 79941107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79942060 79942206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79944908 79945087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79947645 79947831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79948872 79949006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79949717 79949823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79950411 79950578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79950756 79950761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGAAGCAGGTCGCCCCCGATAAGACATGCATGCAGTTCTCCATCCGCCGCCCCAAGCTGCCGTCCTCCG
AGACGCACCCCGAGGAGAGCATGTACAAGAGGCTCGGCGTCTCCGCCTGGCTCAACCACCTGAATGAGCT
GGGCCAGGTGGAGGAGGAGTACAAGCTGCGGAAGGTCTGGCCCTTCCTGCTGCGCTATTACAGCCACGAG
TCCACGTCGGAGGAGCGGGAGGCGCTGCGGCTGCAGAAGCGAAAGGAGTACTCTGAGATCCAGCAGAAAA
GGCTCTCCATGACTCCCGAGGAGCACAGAGCGTTCTGGCGTAATGTGCAGTTCACTGTGGACAAAGACGT
GGTCCGGACAGATCGGAACAACCAGTTCTTCCGGGGGGAAGACAATCCCAATGTGGAGAGCATGAGGAGG
ATCCTGCTGAACTACGCCGTGTACAACCCTGCCGTCGGCTATTCCCAAGGGATGTCGGACCTGGTGGCGC
CCATCTTGGCCGAGGTCCTGGATGAGTCAGACACCTTCTGGTGCTTTGTGGGTTTGATGCAGAACACGAT
CTTCGTCAGCTCACCCCGGGACGAGGACATGGAGAAACAACTGCTGTACCTGCGCGAGCTGCTGCGGCTG
ACGCACGTGCGCTTCTACCAGCACCTGGTCTCGCTGGGCGAGGACGGCCTGCAGATGCTCTTCTGCCACC
GCTGGCTCCTTCTGTGCTTCAAGCGGGAGTTCCCCGAGGCCGAAGCGCTGCGGATCTGGGAGGCCTGCTG
GGCCCACTACCAGACGGACTACTTCCACCTTTTCATCTGCGTGGCCATCGTGGCCATCTACGGGGATGAC
GTCATCGAGCAGCAGCTGGCCACGGACCAGATGCTCCTGCACTTCGGAAACCTGGCCATGCACATGAACG
GGGAGCTCGTTCTCCGGAAGGCGAGGAGTTTGCTGTACCAGTTCCGCCTCCTGCCCCGGATCCCCTGCAG
CCTGCACGATCTGTGTAAGCTGTGCGGGTCAGGCATGTGGGACAGCGGCTCCATGCCCGCGGTGGAGTGC
ACCGGCCACCATCCCGGCTCGGAGAGCTGTCCCTACGGGGGCACGGTGGAGATGCCTTCCCCCAAGTCCC
TGAGGGAAGGCAAGAAGGGCCCAAAGACGCCGCAGGACGGCTTCGGCTTCCGCAGATAG

Translation (392 aa):
MKQVAPDKTCMQFSIRRPKLPSSETHPEESMYKRLGVSAWLNHLNELGQVEEEYKLRKVWPFLLRYYSHE
STSEEREALRLQKRKEYSEIQQKRLSMTPEEHRAFWRNVQFTVDKDVVRTDRNNQFFRGEDNPNVESMRR
ILLNYAVYNPAVGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFVSSPRDEDMEKQLLYLRELLRL
THVRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEACWAHYQTDYFHLFICVAIVAIYGDD
VIEQQLATDQMLLHFGNLAMHMNGELVLRKARSLLYQFRLLPRIPCSLHDLCKLCGSGMWDSGSMPAVEC
TGHHPGSESCPYGGTVEMPSPKSLREGKKGPKTPQDGFGFRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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