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Report for CCDS57352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57352.1 Public Mus musculus 5 Slc4a4 23 108 98 CCDS HistoryNCBI Gene:54403Re-query CCDS DB by CCDS ID:57352.1Re-query CCDS DB by GeneID:54403See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113218.9 ENSMUSP00000108844.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113218.9Link to Ensembl Protein Viewer:ENSMUSP00000108844.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113218Re-query CCDS DB by Protein ID:ENSMUSP00000108844
Original member Current member NCBI NM_001197147.1 NP_001184076.1 Accepted alive Link to Nucleotide Sequence:NM_001197147.1Link to Protein Sequence:NP_001184076.1Re-query CCDS DB by Nucleotide ID:NM_001197147Re-query CCDS DB by Protein ID:NP_001184076Link to BLAST:NP_001184076.1

Chromosomal Locations for CCDS 57352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88934750 88934822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88954778 88954957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89028293 89028428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89038451 89038611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89046213 89046365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89084642 89084718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89122402 89122559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89129639 89129726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89132371 89132525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89133157 89133270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89135646 89135820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89149300 89149433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89156331 89156602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89170751 89170821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89179653 89179844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89197649 89197762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89199655 89199816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89214474 89214652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89215721 89215793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89223196 89223264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89225800 89225973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89228826 89228987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89232764 89232860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89234797 89234840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAACATGTGTGTGATGAAGAAGAAGTAG
AAGGTCACCACACGATCTACATTGGGGTCCATGTGCCCAAGAGCTACCGGAGAAGGAGACGCCACAAGAG
GAAGGCTGGGCACAAGGAAAAGAAGGAAAAGGAGAGAATCTCCGAGAACTACTCCGACAAATCTGATGTG
GAGAATGCGGATGAGTCCAGCAGCAGTATCCTCAAACCCCTCATCTCCCCGGCCGCAGAACGCATCCGAT
TCATCTTGGGAGAGGAAGATGACAGCCCGGCACCTCCTCAGCTCTTCACGGAACTCGATGAGCTTCTGGC
TGTGGATGGACAGGAGATGGAATGGAAGGAGACAGCGAGGTGGATTAAGTTTGAAGAGAAAGTGGAGCAG
GGTGGGGAGCGATGGAGCAAACCCCATGTGGCCACCTTGTCCCTGCACAGCCTGTTTGAGCTGAGGACAT
GTATGGAGAAAGGATCCATCATGCTTGACCGGGAGGCATCTTCTCTCCCACAGCTGGTGGAGATGATTGC
AGACCACCAGATCGAGACAGGCCTACTGAAGCCTGACCTGAAGGATAAGGTCACCTATACTCTGCTCCGG
AAACATCGACATCAAACCAAGAAATCCAACCTTCGGTCCCTGGCTGACATTGGGAAGACTGTCTCCAGTG
CAAGCAGCCCAGCCATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGA
GAAGGATCAGCTGAAGAATAAATTCATGAAAAAACTGCCCCGAGATGCGGAAGCTTCCAATGTGCTTGTT
GGGGAGGTTGACTTCTTGGACACTCCCTTCATTGCCTTTGTTCGCCTACAGCAGGCTGTCATGCTGGGTG
CCCTGACTGAGGTCCCTGTGCCCACAAGGTTCTTGTTCATTCTCTTAGGTCCAAAGGGGAAAGCCAAGTC
CTACCATGAGATTGGAAGAGCTATCGCCACCTTGATGTCTGACGAGGTGTTCCACGACATCGCTTACAAA
GCGAAAGACAGACACGACCTGATTGCTGGCATTGATGAGTTCTTAGATGAAGTCATTGTCCTTCCACCTG
GGGAATGGGACCCCACAATCCGAATAGAGCCTCCAAAGAGTCTCCCATCATCTGACAAAAGAAAGAATAT
GTACTCAGGTGGAGAGAATGTTCAGATGAATGGGGACACACCTCATGATGGAGGCCACGGAGGAGGAGGA
CATGGTGACTGTGAAGAACTACAGAGAACTGGCCGGTTCTGCGGTGGATTAATTAAGGACATAAAGAGGA
AAGCACCATTTTTTGCCAGTGACTTTTATGATGCTTTAAACATTCAGGCTCTCTCTGCGATTCTCTTCAT
TTATCTGGCAACCGTAACCAACGCCATCACTTTTGGAGGCCTGCTCGGGGATGCCACCGACAACATGCAG
GGTGTGTTGGAGAGTTTCCTGGGCACTGCTGTCTCCGGAGCCATCTTCTGCCTTTTTGCGGGTCAACCGC
TTACCATCTTGAGCAGCACGGGACCAGTGTTGGTGTTTGAGAGGCTTCTTTTTAACTTCAGCAAGGACCA
TAATTTTGACTACTTGGAGTTTCGTCTTTGGATTGGCCTGTGGTCAGCCTTCATGTGTCTTGTCCTGGTG
GCCACTGATGCGAGCTTCCTGGTTCAGTACTTCACCCGTTTCACAGAAGAAGGTTTCTCCTCTCTCATCA
GCTTCATCTTCATCTATGATGCTTTCAAGAAGATGATCAAGCTAGCAGATTACTATCCCATCAACTCTGA
CTTCAAAGTGGGTTACAATACTCACTTCTCTTGTGCTTGCCTGCCACCCGACCCAGTTAATCTCTCAGTA
TCTAATGATACCACACTAGCCCCAGAGGACCTGCCGACCATTTCTTCTACTGACATGTACCATAATGTCA
CCTTTGACTGGGCCTATTTGTCAAAGAAGGAGTGTGTGAAGTATGGAGGGAAGCTCGTGGGAAACAACTG
TGACTTCGTGCCTGATATCACACTCATGTCCTTCATTCTCTTCCTGGGCACTTACACCTCGTCTATGGCT
ATGAAGAAATTCAAAACCAGTCGCTATTTTCCAACCACAGCAAGAAAACTGATCAGTGATTTTGCCATTA
TCCTGTCCATTCTCATATTCTGTGTAATAGATGCCCTAGTCGGCGTGGACACTCCGAAGCTCATTGTACC
AAGTGAGTTCAAGCCAACAAGTCCTAACAGGGGTTGGTTTGTCCCGCCATTTGGAGGAAACCCTTGGTGG
GTGTGCCTTGCTGCTGCCATCCCGGCTTTGCTAGTCACCATCCTGATTTTCATGGACCAGCAGATCACCG
CTGTGATTGTGAACAGGAAAGAGCATAAACTCAAGAAAGGAGCTGGGTATCACCTGGATCTGTTTTGGGT
CGCCATCCTCATGGTGGTATGCTCCTTCATGGCTCTTCCCTGGTATGTGGCTGCTACTGTTATCTCCATT
GCCCACATTGACAGTCTGAAGATGGAGACGGAGACATCTGCGCCTGGAGAACAACCAAAATTTCTGGGAG
TAAGGGAACAACGAGTCACTGGAACCCTTGTGTTTATTCTGACTGGCCTGTCAGTCTTCATGGCTCCCAT
CCTGAAGTTTATCCCGATGCCTGTGCTGTATGGTGTGTTCCTGTATATGGGGGTGGCCTCACTTAACGGT
GTGCAGTTCATGGACCGTCTCAAGCTGCTGCTGATGCCCTTGAAGCATCAGCCCGACTTCATCTACCTGC
GCCACGTCCCCCTCCGCCGAGTCCACCTGTTCACCTTCCTGCAGGTGTTGTGCCTGGCTCTGCTCTGGAT
CCTCAAGTCAACAGTGGCTGCAATTATTTTTCCTGTTATGATCCTGGCCCTGGTAGCAGTCAGAAAAGGT
ATGGATTACCTCTTCTCCCAGCACGACCTCAGCTTCCTTGATGATGTCATTCCAGAAAAGGACAAGAAAA
AGAAGGAGGACGAGAAGAAAAAGAAAAAGAAGAAAGGAAGTTTGGATAGCGACAATGACGATTCTGACTG
CCCATACTCAGAAAAGGTCCCCAGTATTAAAATTCCAATGGACATCATGGAACAGCAACCTTTCCTAAGT
GATAACAAACCCTTGGACAGAGAAAGATCCTCAACATTCCTCGAACGCCACACATCATGCTGA

Translation (1070 aa):
MEDEAVLDRGASFLKHVCDEEEVEGHHTIYIGVHVPKSYRRRRRHKRKAGHKEKKEKERISENYSDKSDV
ENADESSSSILKPLISPAAERIRFILGEEDDSPAPPQLFTELDELLAVDGQEMEWKETARWIKFEEKVEQ
GGERWSKPHVATLSLHSLFELRTCMEKGSIMLDREASSLPQLVEMIADHQIETGLLKPDLKDKVTYTLLR
KHRHQTKKSNLRSLADIGKTVSSASSPAMTHRNLTSSSLNDISDKPEKDQLKNKFMKKLPRDAEASNVLV
GEVDFLDTPFIAFVRLQQAVMLGALTEVPVPTRFLFILLGPKGKAKSYHEIGRAIATLMSDEVFHDIAYK
AKDRHDLIAGIDEFLDEVIVLPPGEWDPTIRIEPPKSLPSSDKRKNMYSGGENVQMNGDTPHDGGHGGGG
HGDCEELQRTGRFCGGLIKDIKRKAPFFASDFYDALNIQALSAILFIYLATVTNAITFGGLLGDATDNMQ
GVLESFLGTAVSGAIFCLFAGQPLTILSSTGPVLVFERLLFNFSKDHNFDYLEFRLWIGLWSAFMCLVLV
ATDASFLVQYFTRFTEEGFSSLISFIFIYDAFKKMIKLADYYPINSDFKVGYNTHFSCACLPPDPVNLSV
SNDTTLAPEDLPTISSTDMYHNVTFDWAYLSKKECVKYGGKLVGNNCDFVPDITLMSFILFLGTYTSSMA
MKKFKTSRYFPTTARKLISDFAIILSILIFCVIDALVGVDTPKLIVPSEFKPTSPNRGWFVPPFGGNPWW
VCLAAAIPALLVTILIFMDQQITAVIVNRKEHKLKKGAGYHLDLFWVAILMVVCSFMALPWYVAATVISI
AHIDSLKMETETSAPGEQPKFLGVREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNG
VQFMDRLKLLLMPLKHQPDFIYLRHVPLRRVHLFTFLQVLCLALLWILKSTVAAIIFPVMILALVAVRKG
MDYLFSQHDLSFLDDVIPEKDKKKKEDEKKKKKKKGSLDSDNDDSDCPYSEKVPSIKIPMDIMEQQPFLS
DNKPLDRERSSTFLERHTSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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