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Report for CCDS56856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56856.1 Public Mus musculus 12 Nrxn3 23 108 98 CCDS HistoryNCBI Gene:18191Re-query CCDS DB by CCDS ID:56856.1Re-query CCDS DB by GeneID:18191See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163134.7 ENSMUSP00000129678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163134.7Link to Ensembl Protein Viewer:ENSMUSP00000129678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163134Re-query CCDS DB by Protein ID:ENSMUSP00000129678
Original member NCBI NM_001198587.3 NP_001185516.2 Updated not alive Link to Nucleotide Sequence:NM_001198587.3Link to Protein Sequence:NP_001185516.2Re-query CCDS DB by Nucleotide ID:NM_001198587Re-query CCDS DB by Protein ID:NP_001185516
Current member NCBI NM_001198587.4 NP_001185516.2 Accepted alive Link to Nucleotide Sequence:NM_001198587.4Link to Protein Sequence:NP_001185516.2Re-query CCDS DB by Nucleotide ID:NM_001198587Re-query CCDS DB by Protein ID:NP_001185516Link to BLAST:NP_001185516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185516.2 1571 Q6P9K9-1 1571 100% 0 0

Chromosomal Locations for CCDS 56856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 88795185 88795893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88832553 88832570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88850279 88850308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89187022 89187323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89193046 89193207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89254674 89255112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89260138 89260521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89348246 89348449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89354453 89354479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89503018 89503137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89510325 89510706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89511916 89512106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89512939 89513112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89532891 89533010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89976347 89976528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90168920 90169091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90199147 90199236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90204511 90204818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90283572 90283650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90331788 90332410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4716 nt):
ATGAGCTTTACCCTCCACTCAGTTTTCTTCACCTTGAAGGTGAGCATCTTTCTGGGCTCCCTGGTGGGGC
TTTGCCTGGGTCTGGAGTTCATGGGCCTTCCTAACCAGTGGGCCCGCTACCTGCGTTGGGATGCAAGCAC
GCGCAGTGACCTGAGCTTCCAGTTCAAGACCAATGTTTCCACTGGGCTGCTCCTGTATTTGGATGATGGT
GGTGTCTGTGACTTCCTCTGTCTCTCCCTGGTGGATGGCCGCGTTCAGCTCCGCTTTAGCATGGACTGTG
CCGAGACCACTGTGCTATCCAACAAGCAGGTGAACGACAGCAGTTGGCACTTCCTCATGGTGAGCCGTGA
TCGTGTGCGCACTGGGCTGGTGATTGATGGTGAGGGCCAGTCTGGAGAGCTACGGCCCCAGCGGCCTTAT
ATGGATGTGGTCAGTGATTTGTTCCTCGGTGGCGTCCCCGCTGACATTCGACCTTCTGCCCTGACCCTCG
ATGGAGTACAGAGCATGCCTGGCTTTAAGGGATTAATGCTGGATCTCAAGTATGGCAACTCGGAACCTCG
GCTTCTGGGGAGCCAGAGCGTCCAGTTAGAAGCAGAGGGACCCTGTGGCGAGCGTCCCTGTGAAAATGGT
GGGATCTGCTTCCTCTTGGATGGTCATCCCACCTGTGACTGTTCTACCACTGGCTATGGTGGCACACTCT
GCTCAGAAGATGTCAGTCAAGGTCCAGGCCTCTCCCATCTTATGATGAGTGAACAAGCACGAGAGGAGAA
CGTGGCCACCTTCCGAGGCTCAGAGTATCTGTGCTATGACCTGTCCCAGAACCCCATCCAGAGCAGCAGC
GACGAAATCACCCTTTCCTTTAAGACCTGGCAACGCAATGGGCTCATCCTCCACACTGGCAAGTCGGCCG
ACTATGTTAACCTGGCTCTGAAGGATGGTGCGGTCTCCTTGGTCATTAACCTGGGGTCCGGGGCCTTTGA
GGCCATTGTGGAGCCAGTGAATGGGAAATTCAACGACAACGCCTGGCATGATGTCAAAGTGACACGCAAT
CTTCGGCAGGTGACAATCTCTGTGGATGGCATCCTAACCACAACGGGCTACACTCAAGAGGACTACACCA
TGCTGGGCTCAGATGACTTCTTCTATGTTGGTGGAAGCCCAAGTACCGCAGACTTGCCAGGTTCACCTGT
GAGCAACAACTTCATGGGCTGCCTTAAAGAGGTTGTTTATAAGAATAATGACATCCGTCTAGAGCTGTCT
CGCTTGGCCCGGATTGGAGACACCAAGATGAAAATCTATGGTGAAGTTGTGTTCAAGTGTGAGAACGTGG
CCACACTGGATCCCATCAACTTTGAGACCCCAGAGGCTTACATCAGCTTGCCCAAGTGGAACACCAAACG
TATGGGCTCCATTTCCTTTGACTTTCGCACCACTGAGCCCAACGGCCTGATTCTCTTCACTCACGGGAAG
CCTCAAGAAAGGAAAGATGTCCGGAGCCAAAAGAACACAAAAGTTGACTTCTTTGCTGTGGAACTTCTTG
ATGGCAACCTGTATTTGCTGCTTGACATGGGCTCTGGCACCATCAAAGTGAAGGCCACTCAGAAGAAGGC
CAATGATGGGGAATGGTACCACGTGGATATTCAGCGTGATGGCAGATCAGGTACCATATCTGTGAACAGC
AGGCGCACGCCATTCACCGCCAGTGGGGAGAGTGAAATTCTCGACCTGGAGGGGGACATGTATCTGGGCG
GGCTGCCAGAGAACCGAGCTGGCCTCATCCTCCCCACGGAGCTCTGGACCGCCATGCTCAACTACGGTTA
CGTGGGCTGCATCCGCGACCTGTTCATCGATGGGCGCAGCAAGAACATCCGGCAGCTGGCGGAGATGCAG
AACGCAGCAGGCGTCAAGTCCTCCTGTTCACGCATGAGCGCCAAGCAGTGTGACAGCTACCCCTGCAAGA
ACAACGCGGTGTGCAAGGACGGCTGGAACCGCTTCATCTGCGACTGCACTGGCACCGGCTACTGGGGGAG
AACCTGCGAAAGAGAGGCATCTATCCTGAGCTATGACGGCAGCATGTACATGAAGGTCATCATGCCCATG
GTGATGCACACGGAGGCAGAGGATGTGTCCTTCCGCTTCATGTCACAGCGAGCCTATGGGCTACTGGTAG
CCACAACCTCCAGGGATTCTGCAGATACACTGCGTCTAGAGTTGGATGGTGGGCGTGTCAAGCTCATGGT
TAACTTAGACTGTATCAGGATAAACTGTAACTCCAGCAAAGGACCTGAGACCCTGTATGCAGGGCAGAAG
CTCAATGACAATGAGTGGCACACCGTCCGGGTAGTGCGGAGAGGAAAAAGCCTTAAGCTAACAGTGGATG
ATGATGTGGCTGAGGGGACAATGGTGGGCGACCACACCCGCCTGGAATTCCACAATATTGAAACTGGTAT
CATGACTGAGAAGCGTTACATCTCTGTGGTCCCCTCCAGTTTCATTGGCCATCTACAGAGCCTCATGTTC
AATGGCTTACTGTACATTGATTTGTGCAAAAATGGCGACATCGACTACTGTGAACTGAAGGCTCGCTTTG
GACTGAGAAACATCATCGCCGACCCTGTCACTTTTAAGACCAAGAGCAGCTACCTGACCCTCGCCACCCT
ACAGGCTTACACCTCCATGCACCTCTTCTTCCAGTTCAAGACCACTTCAGCTGATGGCTTCATTCTCTTC
AATAGCGGAGATGGCAATGATTTTATTGCAGTTGAGCTGGTCAAGGGGTACATACACTATGTGTTTGATC
TCGGCAATGGTCCCAATGTGATCAAAGGCAACAGTGACCGCCCCCTGAATGACAACCAGTGGCACAACGT
GGTCATCACCAGGGACAGCAGTAACACCCACAGTCTGAAGGTGGACACCAAGGTAGTCACTCAGGTCATC
AATGGTGCCAAAAATCTGGATTTGAAAGGTGACCTCTATATGGCTGGCTTAGCCCAGGGCATGTACAGCA
ACCTTCCCAAGCTTGTGGCCTCCAGGGATGGATTTCAGGGCTGCCTGGCCTCTGTGGACTTGAATGGACG
CCTGCCTGATCTCATCAACGATGCTCTCCACAGGAGTGGACAGATCGAGCGAGGCTGTGAAGGACCCAGT
ACAACCTGTCAGGAGGATTCATGCGCCAACCAGGGAGTTTGCATGCAGCAGTGGGAAGGTTTCACCTGTG
ACTGCTCCATGACATCATATTCTGGAAACCAGTGCAATGACCCTGGTGCAACATACATCTTTGGGAAAAG
CGGTGGCCTCATCCTCTATACCTGGCCAGCAAATGACAGACCCAGCACACGCTCTGACCGTCTCGCCGTG
GGCTTCAGCACTACTGTGAAGGATGGTATCTTAGTACGCATTGACAGCGCCCCTGGACTTGGCGACTTCC
TCCAGCTTCACATAGAACAAGGGAAAATTGGAGTTGTCTTCAATATTGGCACAGTTGACATCTCCATCAA
AGAAGAGAGAACTCCTGTCAATGATGGCAAATACCACGTTGTGCGCTTCACCAGGAATGGGGGAAATGCT
ACACTTCAGGTGGACAACTGGCCAGTGAATGAGCACTATCCTACAGGCAACACTGATAATGAACGCCTCC
AAATGGTAAAACAGAAAATCCCCTTCAAATATAACCGGCCCGTAGAGGAGTGGCTGCAGGAAAAAGGCCG
GCAGCTAACCATCTTCAACACCCAGGCGCAAATAGCCATCGGAGGAAAGGACAAAGGACGTCTCTTCCAA
GGTCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTACTGAACATGGCAGCTGAGAACAACCCTAATA
TTAAAATCAATGGAAGTGTCCGGCTAGTGGGAGAAGTCCCATCAGTCTCAGGAACAACACAGACAACGTC
CATGCCACCTGAAATGTCTACCACCGTCATGGAAACCACCACCACCATGGCTACGACCACCACCCGAAAG
AACCGCTCTACAGCCAGCATTCAGCCCACGTCAGATGATCTTGTTTCATCTGCTGAATGTTCAAGTGATG
ATGAAGACTTTGTCGAATGTGAACCAAGTACAGATAAGAGTCTTTCCACTTCAATCTTCGAAGGTGGCTA
CAAAGCACATGCGCCCAAGTGGGAATCCAAGGACTTTAGACCTAACAAAGTCTCGGAAACTAGTAGAACT
ACAACCACCTCTTTGTCCCCTGAGCTGATCCGCTTCACAGCGTCCTCCTCGTCTGGGATGGTGCCCAAAT
TGCCAGCTGGCAAAATGAATAACCGTGATCTCAAACCCCAGCCTGATATAGTCTTGCTTCCGTTGCCCAC
TGCCTATGAGCTAGACAGCACCAAACTGAAGAGCCCACTAATTACTTCCCCCATGTTCCGTAATGTGCCC
ACAGCAAACCCCACGGAGCCAGGAATCAGACGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCCAGCA
GTACAACAGGGATGGTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCAT
GTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACGAGACGAGGAACTACATCAGCAACTCG
GCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCAAGCCAGCTCCAAGAGCGGCCATAAGAAACAGAAAA
ACAAGGACAAGGAGTATTATGTGTAA

Translation (1571 aa):
MSFTLHSVFFTLKVSIFLGSLVGLCLGLEFMGLPNQWARYLRWDASTRSDLSFQFKTNVSTGLLLYLDDG
GVCDFLCLSLVDGRVQLRFSMDCAETTVLSNKQVNDSSWHFLMVSRDRVRTGLVIDGEGQSGELRPQRPY
MDVVSDLFLGGVPADIRPSALTLDGVQSMPGFKGLMLDLKYGNSEPRLLGSQSVQLEAEGPCGERPCENG
GICFLLDGHPTCDCSTTGYGGTLCSEDVSQGPGLSHLMMSEQAREENVATFRGSEYLCYDLSQNPIQSSS
DEITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAWHDVKVTRN
LRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDIRLELS
RLARIGDTKMKIYGEVVFKCENVATLDPINFETPEAYISLPKWNTKRMGSISFDFRTTEPNGLILFTHGK
PQERKDVRSQKNTKVDFFAVELLDGNLYLLLDMGSGTIKVKATQKKANDGEWYHVDIQRDGRSGTISVNS
RRTPFTASGESEILDLEGDMYLGGLPENRAGLILPTELWTAMLNYGYVGCIRDLFIDGRSKNIRQLAEMQ
NAAGVKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCTGTGYWGRTCEREASILSYDGSMYMKVIMPM
VMHTEAEDVSFRFMSQRAYGLLVATTSRDSADTLRLELDGGRVKLMVNLDCIRINCNSSKGPETLYAGQK
LNDNEWHTVRVVRRGKSLKLTVDDDVAEGTMVGDHTRLEFHNIETGIMTEKRYISVVPSSFIGHLQSLMF
NGLLYIDLCKNGDIDYCELKARFGLRNIIADPVTFKTKSSYLTLATLQAYTSMHLFFQFKTTSADGFILF
NSGDGNDFIAVELVKGYIHYVFDLGNGPNVIKGNSDRPLNDNQWHNVVITRDSSNTHSLKVDTKVVTQVI
NGAKNLDLKGDLYMAGLAQGMYSNLPKLVASRDGFQGCLASVDLNGRLPDLINDALHRSGQIERGCEGPS
TTCQEDSCANQGVCMQQWEGFTCDCSMTSYSGNQCNDPGATYIFGKSGGLILYTWPANDRPSTRSDRLAV
GFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNA
TLQVDNWPVNEHYPTGNTDNERLQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQ
GQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSVSGTTQTTSMPPEMSTTVMETTTTMATTTTRK
NRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTDKSLSTSIFEGGYKAHAPKWESKDFRPNKVSETSRT
TTTSLSPELIRFTASSSSGMVPKLPAGKMNNRDLKPQPDIVLLPLPTAYELDSTKLKSPLITSPMFRNVP
TANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNS
AQSNGTLMKEKQASSKSGHKKQKNKDKEYYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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