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Report for CCDS56701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56701.1 Public Mus musculus 10 Cep85l 23 108 98 CCDS HistoryNCBI Gene:100038725Re-query CCDS DB by CCDS ID:56701.1Re-query CCDS DB by GeneID:100038725See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220443.1 ENSMUSP00000151909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220443.1Link to Ensembl Protein Viewer:ENSMUSP00000151909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220443Re-query CCDS DB by Protein ID:ENSMUSP00000151909
Original member Current member NCBI NM_001204983.2 NP_001191912.1 Accepted alive Link to Nucleotide Sequence:NM_001204983.2Link to Protein Sequence:NP_001191912.1Re-query CCDS DB by Nucleotide ID:NM_001204983Re-query CCDS DB by Protein ID:NP_001191912Link to BLAST:NP_001191912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191912.1 806 A0A1W2P884 806 100% 0 0

Chromosomal Locations for CCDS 56701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 53278081 53278244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53281349 53281580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53283837 53283944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53291764 53291814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53292258 53292375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53296214 53296368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53298053 53298205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53301502 53301681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53312508 53312625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53319598 53319719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53348472 53349259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53358049 53358207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53379509 53379581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGTGGGGCCGTTTCCTGGCCCCGGAGGCTGGCGGCCGGGACAGCCCCAGCGGGGCCCGCAGCTTCCCTG
CGGGCTCAGATTATTCGTCAGCATGGTTACCTGGTAATGAATCATTATGGCAGGCCACAGCTGTTCCATC
TAACCATCGAAATAACCACCTCAGAAGACACAGCATAACGTCTGATAGTGGAGACACTGGCATTGGCACT
TCTTGTTCTGACAGCGTGGAAGATCATTCAACTTCAAGTGGCACGTTATCTTTCAAGCCTAGTCGATCAT
TGGTCACTCTTCCCACTGCCCATGTGATGCCATCTAACTCCAGTGCTTCCGTTTCCAAACATAGGGAATC
TCTAACACCAGATGGCTCTAAATGGAGTACTAGCCTCATGCAGACATTGGGAGACCACAGCAGAGGGGAG
CGGGACTCCTCCCTAGACATGAAGGACTTCAGGCCCCTGAGGAAATGGTCATCTTTGTCCAAACTTACTG
CCCCAGATACCCGCAACCACAGTGGCATTGCATACCCGCAAGAGCTGAGGAATAGCTTGGAGATGACAGG
GAAGGGCAAGCCTTTTATGTCCCACTTACGGACCTTTGGGCCAAGTTGCTTACATGACAGTATGGAGCTG
CTTAAGCTGGAAGACAAGGAAATAAATAAAAAGCGGTCATCAACTCTGGACTGCAAATATAAATTTGAGA
GCTGCAACAAAGAAGATGTCAGAGTCTCTTCCTCTGCTCTCAGGAGACAGACTTTAGACATGACATACAG
TGCCTTACCTGAGAGCAAGCCCATTGTGACAGGCTCAGAGACTTTTGAGTCTCCAAAGTATTTAATGCTG
GGCCAGCAGGCAGTAGGTGGAGTTCCCATTCAACCTTCTGTGAGGACTCAGATGTGGCTGACAGAGCAGT
TACGGACAAACCCATTGGAAGGCAGAACCACAGACGATTCTTACAGTTTAGCTCCTTGGCAACAGCCACA
AACTGAAGAGTTTCAGCAAGGAAGTGAGACGCCAATGCAGGTTTTGACTGGATCATCTCGTCAGAGTTAT
TCACCTCCTGGCTTCCAGGATTTCAGTAAATGGGAATCAGTGCTGAAAATAAAAGAAGGACTTCTGAGGC
AGAAGGAAATTGTAATTGATAGGCAGAAGCAACAAATTAACCACTTACATGAAAGGATAAGGGATAATGA
ACTACGGGCCCAGCATGCTATGCTAGGACATTATGTAAATTGTGAAGACTCGTACGTGAGTAATTTACAG
CCTCAATACGAGAGCAGTTCAGGCCAGAGTCTATTTACAGAGCAGCCATTGTCCCATCCCCACCAAGAAG
AACTTGAGCAAAAGCTAGCATCTACTGAGAAAGAAGTTTTGCAGCTCAATGAGTTTCTCAAACAACGAAT
AAGCCAATTTAGTGAAGAGAAGAAGAAATTAGAGGAGAAGTTGAAAACCAGAGATAGATACATCAGCAGC
CTGAAAAAGAAATGCCAGAAGGAATCTGAGCAAAACAAAGAGAAGCAGAGGAGAATTGAGACCTTGGAAA
AGTACCTGGCAGACCTTCCAACTCTAGATGACGTACAGAGTCAGAGTCTACAGCTTCAAGTTCTTGAAGA
AAAAAACAAGAATTTGCAAGAGACTTTGATAGACACAGAGAAGCAGCTTGAGGAGATTAAGAAGCAATGT
CAAGATAAAGAAGTGCAGCTACTGTGTCAGAAGAAGAAGGAAAAGGAGCTGGTAACTTCTGTTCAGAGCT
TACAACAAAAAGTAGAAAAATGCCTTGAAGATGGAATCCGCCTTCCCATGTTAGATGCCAAACAGCTTCA
GAGTGAAAATGATAATCTGAGAGAGCAGAATGCAACAGCCAGCAAGATAATAGAGAGCCAGCAGGATGAA
ATTAACAGAATGATTTTAGAAATTCAGTCTATGCAAGGGAAACTTTGTGAAGAGAAACTGACTGCGCGGA
GTACTGTGGAAGAGCTAGGAAGGAAAGAAGGAAGCCTCCAGAGGTTGACAGAAGCGCTGCTTGAAAACCA
AAGACAGATGGGAGAGACGTACTCTTTACTGGATCAGGGCCACGAAGCAGAGCAGTCTAGGCCACAGACC
ATTCATTCTAAGTGGCCTCTCTTTGATTTGACTGTGATTGATCAGCTGTTCAAGGAAATGTCATATTGTT
TGTTTGACTTGAAAGCATTGTGTAGTATTCTTAATCAACGTGCTCAGGGCAAGGAGCCTAACCTCTCATT
GTTACTGGGAATCCGATCAATGAACTGTTCAGCTGAAGAGACTGAAAATGACCACAGCCCAGAAACGCTC
ACTAAAAAGCTCTCAGATGTGTGCCAGTTACGGAGGGACATTGATGAATTGAGGACTACAATATCAGACC
GCTATGCTCAGGACATGGGAGACAACTGTGTTACCCAGTGA

Translation (806 aa):
MWGRFLAPEAGGRDSPSGARSFPAGSDYSSAWLPGNESLWQATAVPSNHRNNHLRRHSITSDSGDTGIGT
SCSDSVEDHSTSSGTLSFKPSRSLVTLPTAHVMPSNSSASVSKHRESLTPDGSKWSTSLMQTLGDHSRGE
RDSSLDMKDFRPLRKWSSLSKLTAPDTRNHSGIAYPQELRNSLEMTGKGKPFMSHLRTFGPSCLHDSMEL
LKLEDKEINKKRSSTLDCKYKFESCNKEDVRVSSSALRRQTLDMTYSALPESKPIVTGSETFESPKYLML
GQQAVGGVPIQPSVRTQMWLTEQLRTNPLEGRTTDDSYSLAPWQQPQTEEFQQGSETPMQVLTGSSRQSY
SPPGFQDFSKWESVLKIKEGLLRQKEIVIDRQKQQINHLHERIRDNELRAQHAMLGHYVNCEDSYVSNLQ
PQYESSSGQSLFTEQPLSHPHQEELEQKLASTEKEVLQLNEFLKQRISQFSEEKKKLEEKLKTRDRYISS
LKKKCQKESEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLIDTEKQLEEIKKQC
QDKEVQLLCQKKKEKELVTSVQSLQQKVEKCLEDGIRLPMLDAKQLQSENDNLREQNATASKIIESQQDE
INRMILEIQSMQGKLCEEKLTARSTVEELGRKEGSLQRLTEALLENQRQMGETYSLLDQGHEAEQSRPQT
IHSKWPLFDLTVIDQLFKEMSYCLFDLKALCSILNQRAQGKEPNLSLLLGIRSMNCSAEETENDHSPETL
TKKLSDVCQLRRDIDELRTTISDRYAQDMGDNCVTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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