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Report for CCDS55841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55841.1 Public Homo sapiens 12 MDM1 24 110 108 CCDS HistoryNCBI Gene:56890Re-query CCDS DB by CCDS ID:55841.1Re-query CCDS DB by GeneID:56890See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411698.6 ENSP00000391006.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411698.6Link to Ensembl Protein Viewer:ENSP00000391006.2Re-query CCDS DB by Nucleotide ID:ENST00000411698Re-query CCDS DB by Protein ID:ENSP00000391006
Original member Current member NCBI NM_001205028.3 NP_001191957.1 Accepted alive Link to Nucleotide Sequence:NM_001205028.3Link to Protein Sequence:NP_001191957.1Re-query CCDS DB by Nucleotide ID:NM_001205028Re-query CCDS DB by Protein ID:NP_001191957Link to BLAST:NP_001191957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191957.1 679 Q8TC05-4 679 100% 0 0

Chromosomal Locations for CCDS 55841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 68295254 68295366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68296923 68296982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68302620 68302872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68313443 68313552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68313644 68313753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68314948 68315265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68316078 68316253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68316581 68316610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68321347 68321446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68321525 68321628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68323073 68323240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68326657 68327021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68331107 68331221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68332228 68332245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGCCGGTGCGCTTCAAGGGGCTGAGTGAATACCAGAGGAACTTCCTGTGGAAAAAGTCTTATTTGTCCG
AGTCTTGTAATTCCTCCGTGGGGCGAAAGTACCCATGGGCTGGACTTAGATCAGATCAATTAGGCATCAC
GAAAGAGCCAAGTTTTATTTCAAAAAGAAGAGTCCCTTACCATGACCCACAGATTTCAAAATCTCTGGAG
TGGAATGGAGCTATCTCAGAGAGCAATGTGGTTGCATCACCAGAACCAGAAGCCCCGGAAACACCAAAAT
CACAAGAAGCAGAACAAAAGGATGTTACTCAAGAAAGAGTTCACTCACTAGAAGCTTCCAGGGTTCCCAA
AAGAACCAGATCTCACTCTGCAGACTCCAGAGCTGAAGGGGCTTCAGATGTGGAAAATAATGAGGGTGTA
ACAAACCATACACCAGTTAATGAAAATGTGGAACTGGAACATTCTACCAAGGTTCTTTCAGAAAATGTAG
ATAATGGGGTTTTCCACAATAAAAGCCAGTTTGTTCCACCATTCAAAGGTAACTCAGTCATCCATGAAAC
TGAATACAAAAGAAATTTCAAGGGTTTATCTCCAGTGAAAGAACCAAAATTAAGAAATGATTTGAGAGAA
AACAGAAATCTTGAAACAGTGTCTCCTGAAAGGAAGAGTAATAAAATAGACGATCGTTTAAAATTGGAAG
CAGAGATGGAATTAAAAGACTTACACCAGCCTAAAAGGAAGCTTACTCCTTGGAAACATCAAAGGCTTGG
GAAGGTGAATTCCGAATATAGAGCAAAATTTCTGAGCCCAGCTCAGTATTTATATAAAGCTGGGGCTTGG
ACACATGTAAAGGGAAACATGCCAAATCAGGGTTCTCTAAATGCCATGTGGTATGCTGAGGTTAAAGAAC
TCCGAGAAAAGGCTGAGTTTTATAGGAAGCGAGTTCAGGGGACGCATTTTTCTCGGGACCATCTGAATCA
GATTTTATCTGATAGCAACTGCTGTTGGGATGTCTCCTCAACCACAAGCTCAGAAGGAACCGTTAGTAGC
AACATCAGAGCATTAGATCTTGCTGGAGATCCTACAAGCCATAAGACTTTGCAGAAATGTCCTTCTACAG
AACCAGAAGAAAAAGGAAATATCGTGGAAGAACAGCCCCAGAAAAATACCACGGAGAAATTGGGTGTGTC
AGCTCCCACCATACCCGTTAGAAGGCGGCTGGCTTGGGATACAGAGAACACAAGTGAAGACGTACAGAAA
CAGCCCGGGGAGAAAGAGGAGGAGGACGACAATGAAGAGGAAGGGGACAGGAAAACGGGCAAGCAGGCTT
TTATGGGAGAGCAAGAGAAGTTGGATGTACGTGAGAAATCTAAGGCAGATAAGATGAAAGAAGGGTCAGA
TTCTTCTGTATCCTCAGAAAAAGGAGGCCGGCTTCCTACTCCCAAGCTGAGAGAACTTGGTGGAATCCAG
AGGACTCATCATGATCTCACTACTCCAGCTGTTGGTGGTGCTGTTTTAGTGTCTCCATCTAAGATGAAGC
CTCCAGCCCCAGAACAGAGGAAAAGAATGACCTCTCAGGATTGTTTAGAAACTTCAAAGAATGATTTTAC
TAAGAAAGAAAGTCGTGCTGTATCCCTACTGACTTCTCCAGCTGCTGGTATAAAAACAGTTGATCCTCTG
CCTTTGCGGGAAGATTCTGAAGACAATATCCACAAATTTGCTGAGGCAACTCTTCCAGTTTCAAAAATTC
CAAAATACCCAACAAATCCCCCTGGACAGTTGCCTTCTCCACCACATGTTCCATCCTACTGGCATCCCTC
TCGACGAATTCAGGGCTCTCTTAGAGATCCAGAGTTTCAGCACAATGTGGGAAAAGCAAGGATGAACAAT
TTGCAGTTACCTCAACATGAAGCCTTTAATGATGAAGATGAGGACAGATTGTCTGAGATTTCTGCTCGCT
CTGCAGCTTCTAGTCTCCGGGCTTTTCAAACTCTGGCACGAGCTAAGAAAAGGAAGGAGAATTTCTGGGG
TAAAACATAA

Translation (679 aa):
MPVRFKGLSEYQRNFLWKKSYLSESCNSSVGRKYPWAGLRSDQLGITKEPSFISKRRVPYHDPQISKSLE
WNGAISESNVVASPEPEAPETPKSQEAEQKDVTQERVHSLEASRVPKRTRSHSADSRAEGASDVENNEGV
TNHTPVNENVELEHSTKVLSENVDNGVFHNKSQFVPPFKGNSVIHETEYKRNFKGLSPVKEPKLRNDLRE
NRNLETVSPERKSNKIDDRLKLEAEMELKDLHQPKRKLTPWKHQRLGKVNSEYRAKFLSPAQYLYKAGAW
THVKGNMPNQGSLNAMWYAEVKELREKAEFYRKRVQGTHFSRDHLNQILSDSNCCWDVSSTTSSEGTVSS
NIRALDLAGDPTSHKTLQKCPSTEPEEKGNIVEEQPQKNTTEKLGVSAPTIPVRRRLAWDTENTSEDVQK
QPGEKEEEDDNEEEGDRKTGKQAFMGEQEKLDVREKSKADKMKEGSDSSVSSEKGGRLPTPKLRELGGIQ
RTHHDLTTPAVGGAVLVSPSKMKPPAPEQRKRMTSQDCLETSKNDFTKKESRAVSLLTSPAAGIKTVDPL
PLREDSEDNIHKFAEATLPVSKIPKYPTNPPGQLPSPPHVPSYWHPSRRIQGSLRDPEFQHNVGKARMNN
LQLPQHEAFNDEDEDRLSEISARSAASSLRAFQTLARAKKRKENFWGKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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