CCDS Report for Consensus CDS

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Report for CCDS54890.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54890.1	Public	Homo sapiens	5	CEP120	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54890.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENST00000306481.11	ENSP00000307419.6	Accepted	alive
EBI	ENST00000508442.7	ENSP00000421620.3	Accepted	alive
NCBI	NM_001166226.2	NP_001159698.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001159698.1	960	Q8N960-2	960	100%	0	0

Chromosomal Locations for CCDS 54890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)

Genome Browser links:

Chromosome	Start	Stop
5	123346519	123346753
5	123349944	123350089
5	123364496	123364594
5	123372650	123372772
5	123377374	123377535
5	123378336	123378428
5	123382111	123382200
5	123382737	123382889
5	123382986	123383082
5	123384951	123385133
5	123386518	123386667
5	123388432	123388606
5	123389924	123390140
5	123391110	123391337
5	123393300	123393497
5	123399136	123399284
5	123412399	123412540
5	123416010	123416124
5	123418359	123418486

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2883 nt):
ATGCTTGTAGTGGAAGCAAAGTTTGATGGAGAACAGTTGGCTACTGATCCTGTGGACCACACTGACCAGC CAGAATTTGCTACTGAGTTAGCTTGGGAAATTGACAGGAAAGCGCTTCATCAGCACAGGCTACAGCGTAC TCCTATCAAACTCCAATGTTTTGCCTTGGATCCTGTAACTTCAGCCAAGGAAACCATAGGTTACATCGTT CTGGATTTAAGAACCGCTCAAGAAACAAAGCAGGCACCAAAATGGTACCAGTTGCTGAGTAATAAATACA CCAAATTCAAGTCTGAGATACAGATAAGTATTGCTTTGGAAACCGATACAAAGCCACCAGTGGATAGCTT TAAAGCAAAGGGGGCTCCCCCTCGAGATGGAAAAGTACCTGCCATCCTGGCTGGACTTGACCCCAGGGAC ATTGTGGCTGTGCTGAATGAAGAGGGAGGCTACCATCAGATTGGACCAGCAGAATACTGTACTGACTCCT TTATTATGTCAGTGACCATAGCATTTGCTACCCAGTTGGAACAGTTAATTCCATGTACCATGAAACTTCC AGAAAGACAGCCTGAGTTTTTCTTTTACTACTCTTTACTGGGAAATGATGTTACAAATGAACCCTTCAAT GATTTAATCAACCCAAACTTTGAGCCAGAGAGAGCATCAGTTCGCATCCGTAGCAGTGTAGAAATTCTTC GTGTTTACCTGGCTCTTCAGTCTAAACTGCAGATTCACCTCTGCTGTGGAGACCAGTCACTTGGAAGTAC AGAAATACCTTTAACTGGATTACTTAAAAAGGGCAGTACAGAAATCAACCAGCACCCAGTCACAGTCGAA GGTGCTTTTACCCTTGACCCTCCAAACAGAGCCAAACAGAAGCTTGCACCTATTCCTGTGGAGCTAGCCC CAACTGTGGGAGTGTCTGTGGCTCTGCAGAGAGAAGGCATAGACTCCCAGTCTTTAATTGAATTAAAGAC CCAGAATGAACATGAGCCAGAGCATTCAAAGAAGAAAGTTTTAACCCCCATAAAGGAGAAGACACTTACT GGGCCAAAATCACCAACAGTGTCCCCTGTTCCATCTCACAACCAGTCACCTCCAACAAAAGATGATGCAA CAGAAAGTGAAGTGGAAAGTTTACAGTATGATAAGGACACCAAACCAAATCCAAAAGCCAGTTCTTCTGT ACCTGCTTCACTGGCCCAGCTAGTGACTACATCCAATGCTTCAGAAGTAGCTTCAGGACAGAAGATTGCT GTACCAGCAACATCACATCATTTTTGCTTTTCAATAGACTTAAGGAGTATACATGCCTTGGAGATTGGTT TTCCAATCAACTGTATATTAAGGTACTCATATCCATTCTTTGGAAGTGCAGCTCCTATTATGACTAATCC TCCTGTAGAAGTTCGGAAAAACATGGAAGTTTTTCTTCCCCAGTCTTACTGTGCATTTGATTTTGCAACT ATGCCTCATCAGCTGCAAGACACCTTCTTAAGGATTCCATTACTGGTTGAACTATGGCACAAGGATAAAA TGAGTAAAGATTTACTTCTGGGAATTGCGAGAATCCAGCTTTCTAACATCTTGTCTTCAGAAAAAACTCG TTTTTTAGGTTCTAATGGTGAACAGTGTTGGCGTCAAACTTACAGTGAAAGTGTGCCTGTTATAGCAGCA CAAGGATCAAATAACAGGATAGCAGATCTTTCTTACACAGTGACTCTAGAAGATTATGGACTAGTAAAAA TGCGTGAGATTTTTATCTCTGATTCATCTCAGGGTGTATCTGCCGTACAGCAAAAGCCGTCTTCTCTTCC TCCAGCACCTTGTCCTTCAGAGATCCAGACAGAGCCTCGTGAAACGTTAGAATACAAAGCAGCACTTGAG CTAGAAATGTGGAAGGAGATGCAAGAAGATATATTTGAAAATCAGCTGAAGCAGAAAGAACTGGCTCATA TGCAGGCTCTTGCAGAGGAATGGAAGAAAAGGGACCGAGAAAGAGAATCACTAGTAAAGAAAAAGGTGGC TGAATATACTATTCTAGAAGGAAAACTTCAAAAAACTCTAATTGACTTGGAGAAGCGAGAGCAGCAGCTT GCTAGTGTGGAATCAGAGCTTCAAAGAGAAAAAAAGGAACTGCAATCAGAACGTCAGCGGAACCTGCAAG AACTGCAGGACTCTATCCGTAGGGCCAAAGAGGACTGTATTCACCAAGTAGAACTAGAAAGGTTAAAAAT CAAACAGCTCGAAGAGGATAAACACCGCCTTCAGCAACAGCTTAATGATGCTGAAAATAAGTATAAGATT TTGGAAAAAGAGTTCCAACAGTTCAAGGACCAGCAAAACAACAAACCAGAAATCCGTCTACAGTCTGAAA TAAATCTTCTCACCTTGGAAAAGGTTGAACTTGAAAGAAAGTTGGAATCTGCAACTAAGTCTAAACTGCA TTACAAGCAGCAGTGGGGACGAGCTTTGAAAGAACTTGCCAGACTTAAACAGAGGGAGCAAGAAAGTCAA ATGGCTCGTCTTAAAAAACAGCAGGAAGAATTGGAACAGATGAGACTACGTTACCTTGCCGCTGAGGAAA AAGATACAGTAAAAACCGAGCGACAAGAATTGTTGGATATAAGAAATGAATTGAACAGGTTAAGGCAACA AGAGCAAAAACAATACCAGGATTCCACAGAGATTGCAAGTGGAAAAAAGGATGGCCCCCATGGCAGTGTA TTGGAAGAAGGTTTGGATGATTATTTGACTCGCCTGATAGAAGAAAGGGATACTTTGATGAGAACGGGTG TGTATAATCACGAGGATCGAATAATAAGTGAACTCGACCGACAGATCAGAGAGATTTTGGCAAAAAGCAA TGCCAGTAATTAA
Translation (960 aa):
MLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIV LDLRTAQETKQAPKWYQLLSNKYTKFKSEIQISIALETDTKPPVDSFKAKGAPPRDGKVPAILAGLDPRD IVAVLNEEGGYHQIGPAEYCTDSFIMSVTIAFATQLEQLIPCTMKLPERQPEFFFYYSLLGNDVTNEPFN DLINPNFEPERASVRIRSSVEILRVYLALQSKLQIHLCCGDQSLGSTEIPLTGLLKKGSTEINQHPVTVE GAFTLDPPNRAKQKLAPIPVELAPTVGVSVALQREGIDSQSLIELKTQNEHEPEHSKKKVLTPIKEKTLT GPKSPTVSPVPSHNQSPPTKDDATESEVESLQYDKDTKPNPKASSSVPASLAQLVTTSNASEVASGQKIA VPATSHHFCFSIDLRSIHALEIGFPINCILRYSYPFFGSAAPIMTNPPVEVRKNMEVFLPQSYCAFDFAT MPHQLQDTFLRIPLLVELWHKDKMSKDLLLGIARIQLSNILSSEKTRFLGSNGEQCWRQTYSESVPVIAA QGSNNRIADLSYTVTLEDYGLVKMREIFISDSSQGVSAVQQKPSSLPPAPCPSEIQTEPRETLEYKAALE LEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVKKKVAEYTILEGKLQKTLIDLEKREQQL ASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELERLKIKQLEEDKHRLQQQLNDAENKYKI LEKEFQQFKDQQNNKPEIRLQSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQESQ MARLKKQQEELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQEQKQYQDSTEIASGKKDGPHGSV LEEGLDDYLTRLIEERDTLMRTGVYNHEDRIISELDRQIREILAKSNASN

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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