NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54045.1 Public Homo sapiens 16 CMIP 24 110 108 CCDS HistoryNCBI Gene:80790Re-query CCDS DB by CCDS ID:54045.1Re-query CCDS DB by GeneID:80790See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539778.6 ENSP00000440401.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539778.6Link to Ensembl Protein Viewer:ENSP00000440401.2Re-query CCDS DB by Nucleotide ID:ENST00000539778Re-query CCDS DB by Protein ID:ENSP00000440401
Original member Current member NCBI NM_030629.3 NP_085132.1 Accepted alive Link to Nucleotide Sequence:NM_030629.3Link to Protein Sequence:NP_085132.1Re-query CCDS DB by Nucleotide ID:NM_030629Re-query CCDS DB by Protein ID:NP_085132Link to BLAST:NP_085132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085132.1 679 Q8IY22-2 679 100% 0 0

Chromosomal Locations for CCDS 54045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 81495477 81495494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81607567 81607692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81620876 81620926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81652203 81652364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81657775 81657816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81660884 81660946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81664269 81664349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81670142 81670245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81671966 81672070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81678275 81678628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81691775 81691840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81693158 81693184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81693439 81693487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81696560 81696667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81699685 81699801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81701660 81701800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81702622 81702669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81703939 81704085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81705499 81705604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81707014 81707084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81709746 81709799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGGACAGGCTGCTGAGCCAACTGGGTACATGGAAAACTCAGTCTCCTACAGCGCAATTGAAGACGTTC
AGCTGCTGTCCTGGGAGAATGCCCCGAAGTACTGTTTACAGCTCACGATTCCTGGGGGAACTGTCTTACT
GCAGGCTGCCAATAGCTACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGAAAAAGATTTACAAA
TATAAGAAAGTGCTGAGTAACCCAAGCCGCTGGGAAGTTGTCTTGAAAGAGATCCGGACCCTGGTGGACA
TGGCCCTGACATCCCCCCTGCAGGATGACTCCATCAACCAGGCCCCACTGGAAATCGTCTCGAAACTGCT
CTCAGAGAACACAAACTTGACCACCCAGGAGCATGAAAACATCATTGTGGCAATCGCTCCTTTGCTGGAA
AACAACCACCCACCACCAGATCTCTGTGAATTCTTTTGCAAGCACTGCAGAGAGCGGCCCCGGTCCATGG
TGGTCATCGAGGTGTTCACCCCCGTGGTGCAGCGAATCCTCAAGCATAACATGGACTTTGGGAAGTGCCC
GCGACTGAGGCTGTTTACTCAGGAGTACATCCTTGCCTTGAACGAGCTCAACGCGGGGATGGAAGTGGTG
AAGAAGTTCATTCAGAGCATGCACGGCCCCACAGGGCACTGCCCCCACCCCCGGGTCCTGCCCAACCTGG
TGGCCGTGTGCCTGGCTGCCATCTACTCCTGCTATGAAGAGTTCATCAACAGCCGCGACAATTCCCCAAG
CCTGAAGGAAATCCGGAACGGCTGCCAGCAGCCGTGCGACCGGAAGCCCACTTTACCTCTGCGCCTTCTG
CACCCCAGCCCGGACCTGGTGTCTCAGGAAGCCACGCTGTCTGAGGCCCGGCTCAAGTCGGTGGTCGTGG
CCTCCAGTGAGATCCACGTGGAGGTGGAACGCACCAGCACTGCCAAGCCGGCGCTGACGGCCAGCGCAGG
CAACGACAGCGAGCCCAACCTCATCGACTGCCTCATGGTCAGCCCCGCCTGCAGCACCATGAGCATCGAG
CTGGGCCCCCAGGCCGACCGCACGCTCGGCTGCTACGTGGAAATCCTCAAGCTGCTGTCAGACTATGATG
ACTGGAGACCGTCTCTGGCCAGTTTGCTTCAACCCATTCCATTCCCCAAAGAAGCTCTCGCACATGAGAA
GTTCACCAAGGAACTGAAGTACGTGATTCAGAGGTTCGCCGAAGACCCCAGGCAAGAGGTCCACTCATGC
CTGCTGAGCGTGCGGGCCGGCAAAGATGGCTGGTTCCAGCTCTACAGCCCCGGAGGGGTGGCCTGCGACG
ATGACGGGGAGCTGTTCGCCAGCATGGTGCACATCCTCATGGGCTCCTGTTACAAGACCAAAAAATTCCT
GCTCTCCCTGGCAGAAAACAAGCTGGGTCCCTGCATGCTCCTGGCACTGAGGGGGAACCAGACCATGGTG
GAGATCCTGTGCTTGATGCTGGAATACAACATCATCGACAACAACGACACCCAACTGCAGATCATCTCAA
CCCTGGAGAGCACAGACGTGGGGAAGCGCATGTACGAGCAGCTGTGTGACCGGCAGCGGGAGCTGAAGGA
GCTGCAAAGGAAAGGCGGGCCCACCAGGCTAACACTGCCCTCCAAGTCCACAGACGCTGACTTGGCTCGT
TTGCTGAGCTCCGGCTCCTTCGGAAACCTGGAGAACCTCAGTTTGGCCTTCACCAATGTAACCAGTGCCT
GCGCCGAGCACCTCATCAAACTGCCTTCGCTCAAGCAGCTGAACCTGTGGTCCACTCAGTTTGGAGACGC
TGGCCTTCGGCTCCTGTCGGAACACCTCACCATGCTCCAGGTGCTGAACCTGTGCGAGACCCCGGTCACA
GACGCTGGCCTGCTGGCCCTGAGCTCCATGAAGAGTCTCTGCAGTTTAAACATGAACAGCACCAAGCTCT
CAGCTGACACCTACGAAGATCTGAAGGCCAAGCTTCCCAATTTGAAGGAAGTGGACGTCCGCTACACCGA
AGCCTGGTGA

Translation (679 aa):
MGQAAEPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYK
YKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLE
NNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVV
KKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLL
HPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIE
LGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSC
LLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMV
EILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLAR
LLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVT
DAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH