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Report for CCDS53709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53709.1 Public Homo sapiens 11 ALG9 24 110 108 CCDS HistoryNCBI Gene:79796Re-query CCDS DB by CCDS ID:53709.1Re-query CCDS DB by GeneID:79796See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398006.6 ENSP00000381090.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398006.6Link to Ensembl Protein Viewer:ENSP00000381090.2Re-query CCDS DB by Nucleotide ID:ENST00000398006Re-query CCDS DB by Protein ID:ENSP00000381090
Original member Current member NCBI NM_001077692.2 NP_001071160.1 Accepted alive Link to Nucleotide Sequence:NM_001077692.2Link to Protein Sequence:NP_001071160.1Re-query CCDS DB by Nucleotide ID:NM_001077692Re-query CCDS DB by Protein ID:NP_001071160Link to BLAST:NP_001071160.1
Original member Current member NCBI NM_001352409.1 NP_001339338.1 Accepted alive Link to Nucleotide Sequence:NM_001352409.1Link to Protein Sequence:NP_001339338.1Re-query CCDS DB by Nucleotide ID:NM_001352409Re-query CCDS DB by Protein ID:NP_001339338Link to BLAST:NP_001339338.1
Original member Current member NCBI NM_001352410.1 NP_001339339.1 Accepted alive Link to Nucleotide Sequence:NM_001352410.1Link to Protein Sequence:NP_001339339.1Re-query CCDS DB by Nucleotide ID:NM_001352410Re-query CCDS DB by Protein ID:NP_001339339Link to BLAST:NP_001339339.1
Original member Current member NCBI NM_001352411.2 NP_001339340.1 Accepted alive Link to Nucleotide Sequence:NM_001352411.2Link to Protein Sequence:NP_001339340.1Re-query CCDS DB by Nucleotide ID:NM_001352411Re-query CCDS DB by Protein ID:NP_001339340Link to BLAST:NP_001339340.1
Original member Current member NCBI NM_001352412.2 NP_001339341.1 Accepted alive Link to Nucleotide Sequence:NM_001352412.2Link to Protein Sequence:NP_001339341.1Re-query CCDS DB by Nucleotide ID:NM_001352412Re-query CCDS DB by Protein ID:NP_001339341Link to BLAST:NP_001339341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071160.1 440 Q9H6U8-2 440 100% 0 0
NP_001339338.1 440 Q9H6U8-2 440 100% 0 0
NP_001339339.1 440 Q9H6U8-2 440 100% 0 0
NP_001339340.1 440 Q9H6U8-2 440 100% 0 0
NP_001339341.1 440 Q9H6U8-2 440 100% 0 0

Chromosomal Locations for CCDS 53709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111786397 111786520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111809643 111809773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111836165 111836294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111837468 111837615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111838249 111838378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111840655 111840809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111844601 111844723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111853380 111853485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111853649 111853736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111857602 111857737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111860547 111860598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGATGCTAGCCTTCTTGGTTCTCAGCACTGGCATGTTTTGCTCATCATCAGCATTCCTTCCTAGTAGCT
TCTGTATGTACACTACGTTGATAGCCATGACTGGATGGTATATGGACAAGACTTCCATTGCTGTGCTGGG
AGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGGTTTACCCATTGCCTTTGATTTG
CTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTCGCTGATGGCCCTCATACTATTTCTGGTGC
CTGTGGTGGTCATTGACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAA
TGTCTTTACTCCTCATGGACCTGATCTTTATGGTACAGAACCCTGGTATTTCTATTTAATTAATGGATTT
CTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGC
TGCAGAGATTTCATGTTCAGAATTTAGGCCACCCGTATTGGCTTACCTTGGCTCCAATGTATATTTGGTT
TATAATTTTCTTCATCCAGCCTCACAAAGAGGAGAGATTTCTTTTCCCTGTGTATCCACTTATATGTCTC
TGTGGCGCTGTGGCTCTCTCTGCACTTCAGAAATGTTACCACTTTGTGTTTCAACGATATCGCCTGGAGC
ACTATACTGTGACATCGAATTGGCTGGCATTAGGAACTGTCTTCCTGTTTGGGCTCTTGTCATTTTCTCG
CTCTGTGGCACTGTTCAGAGGATATCACGGGCCCCTTGATTTGTATCCAGAATTTTACCGAATTGCTACA
GACCCAACCATCCACACTGTCCCAGAAGGCAGACCTGTGAATGTCTGTGTGGGAAAAGAGTGGTATCGAT
TTCCCAGCAGCTTCCTTCTTCCTGACAATTGGCAGCTTCAGTTCATTCCATCAGAGTTCAGAGGTCAGTT
ACCAAAACCTTTTGCAGAAGGACCTCTGGCCACCCGGATTGTTCCTACTGACATGAATGACCAGAATCTA
GAAGAGCCATCCAGATATATTGATATCAGTAAATGCCATTATTTAGTGGATTTGGACACCATGAGAGAAA
CACCCCGGGAGCCAAAATATTCATCCAATAAAGAAGAATGGATCAGCTTGGCCTATAGACCATTCCTTGA
TGCTTCTAGATCTTCAAAGCTGCTGCGGGCATTCTATGTCCCCTTCCTGTCAGATCAGTATACAGTGTAC
GTAAACTACACCATCCTCAAACCCCGGAAAGCAAAGCAAATCAGGAAGAAAAGTGGAGGTTAG

Translation (440 aa):
MMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFDL
LVMKHRWKSFFHWSLMALILFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWYFYLINGF
LNFNVAFALALLVLPLTSLMEYLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICL
CGAVALSALQKCYHFVFQRYRLEHYTVTSNWLALGTVFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIAT
DPTIHTVPEGRPVNVCVGKEWYRFPSSFLLPDNWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNL
EEPSRYIDISKCHYLVDLDTMRETPREPKYSSNKEEWISLAYRPFLDASRSSKLLRAFYVPFLSDQYTVY
VNYTILKPRKAKQIRKKSGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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