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Report for CCDS52954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52954.1 Public Mus musculus 9 Gadl1 23 108 98 CCDS HistoryNCBI Gene:73748Re-query CCDS DB by CCDS ID:52954.1Re-query CCDS DB by GeneID:73748See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 52954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069651.12 ENSMUSP00000077694.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069651.12Link to Ensembl Protein Viewer:ENSMUSP00000077694.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069651Re-query CCDS DB by Protein ID:ENSMUSP00000077694
Original member Current member EBI ENSMUST00000121770.1 ENSMUSP00000113240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121770.1Link to Ensembl Protein Viewer:ENSMUSP00000113240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121770Re-query CCDS DB by Protein ID:ENSMUSP00000113240
Original member Current member NCBI NM_028638.1 NP_082914.1 Accepted alive Link to Nucleotide Sequence:NM_028638.1Link to Protein Sequence:NP_082914.1Re-query CCDS DB by Nucleotide ID:NM_028638Re-query CCDS DB by Protein ID:NP_082914Link to BLAST:NP_082914.1

Chromosomal Locations for CCDS 52954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 115937162 115937314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115941274 115941400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115944172 115944262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115948659 115948765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115949498 115949613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115954572 115954651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115954783 115954837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115960357 115960473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115965605 115965669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115966242 115966323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116006499 116006698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116021780 116021831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116030741 116030830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 116073940 116074113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGACCCCTGGTAAGAAGATCCCCATCTTTGTGGATGGGGTTGTACTTAATGGACCTCAAACAGATGTGA
AAGCTGGAGAAAAATTTGTTGAAGAAGCCTGTAGGCTCATAATGGAAGAGGTGGTTTTGAAAGCTACGGA
CGTCAATGAAAAGGTATGTGAGTGGCAGCCCCCTGAGCAGCTGAGGCAGCTCCTTGACCTGGAGATGAGG
GACACAGGCGAGTCACAGGACAAGCTGCTGAAACTCTGCCAAGACGTCATCCACTTCAGCGTCAAAACCA
ACCATCCAAGATTTTTCAACCAGCTCTATGCTGGCCTTGATTACTACTCCTTGGCGGCCCGGATTATAAC
AGAGGCGCTGAATCCAAGCATTTATACGTATGAGGTGTCCCCAGTGTTTCTGTTAGTGGAAGAGGCGGTT
CTGAAGAAAATGATTGAATGTGTTGGCTGGAAAGAAGGGGATGGAATATTTAACCCAGGTGGCTCAGTGT
CCAATATGTGTGCAATGAATTTAGCTAGATACAGACATTGCCCTGATATCAAAGAGAAAGGCCTGTCTGG
TTTGCCAAGATTAATCCTTTTCACATCGGCAGAGTGCCATTACTCCATGAAGAAAGCGGCCTCCTTCCTT
GGGATTGGCACTCAGAACGTGTACTTTGTAGAAACAGATGGAAGAGGAAAAATGATACCGGAGGATCTGG
AAAAACAAATTTGGCAAGCGAGACAAGAGGGGGCGGTGCCATTTCTTGTCTGCGCCACCTCTGGTACCAC
CGTGCTGGGCGCATTTGACCCCCTGGATGAGATTGCTGAGGTCTGCGAGAGGCATGGCCTCTGGCTCCAT
GTGGATGCCTCTTGGGGCGGCTCAGCTTTGGTGTCAAGAAAGCACCGCCGGCTCCTGCATGGCATCCACA
GGGCTGACTCAGTGGCCTGGAACCCACACAAGATGCTGATGGCGGGAATCCAGTGCTCTGCTCTACTTGT
CAAGGACAAATCTGATCTTCTTAAGAAGTGCTACTCTGCCAAAGCAACGTACCTGTTCCAGCAGGATAAA
TTCTATGATGTCAGCTATGACACCGGAGACAAGTCCATTCAGTGCAGCAGGAGGCCTGATGCATTCAAGT
TCTGGATGACCTGGAAGGCTCTGGGCACATCAGGACTCGAGGAGAGAGTAAATCGTGCCTTTGCTCTATC
TCGGTACCTGGTAGACGAAATCAAGAAAAGAGAAGGCTTCAAGCTGCTGATGGAGCCTGAATATACCAAT
GTTTGCTTTTGGTACATTCCACCGAGTCTCAGAGAGATGGAGGAAGGACCAGAGTTCTGGAGAAAGCTTA
GCTTGGTGGCCCCAGCCATCAAGGAGAAAATGATGAAGAAGGGAAGTCTGATGTTGGGCTACCAGCCCCA
CCGGGGGAAGGTCAACTTCTTCCGCCAGGTGGTCATCAGCCCTCAAGTGAGCCGGGAAGACATGGACTTC
CTGCTGGATGAGATAGACAGCCTGGGGAGAGATATGTAG

Translation (502 aa):
MTPGKKIPIFVDGVVLNGPQTDVKAGEKFVEEACRLIMEEVVLKATDVNEKVCEWQPPEQLRQLLDLEMR
DTGESQDKLLKLCQDVIHFSVKTNHPRFFNQLYAGLDYYSLAARIITEALNPSIYTYEVSPVFLLVEEAV
LKKMIECVGWKEGDGIFNPGGSVSNMCAMNLARYRHCPDIKEKGLSGLPRLILFTSAECHYSMKKAASFL
GIGTQNVYFVETDGRGKMIPEDLEKQIWQARQEGAVPFLVCATSGTTVLGAFDPLDEIAEVCERHGLWLH
VDASWGGSALVSRKHRRLLHGIHRADSVAWNPHKMLMAGIQCSALLVKDKSDLLKKCYSAKATYLFQQDK
FYDVSYDTGDKSIQCSRRPDAFKFWMTWKALGTSGLEERVNRAFALSRYLVDEIKKREGFKLLMEPEYTN
VCFWYIPPSLREMEEGPEFWRKLSLVAPAIKEKMMKKGSLMLGYQPHRGKVNFFRQVVISPQVSREDMDF
LLDEIDSLGRDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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