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Report for CCDS52838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52838.1 Public Mus musculus 9 Trip4 23 108 98 CCDS HistoryNCBI Gene:56404Re-query CCDS DB by CCDS ID:52838.1Re-query CCDS DB by GeneID:56404See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122410.7 ENSMUSP00000112866.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122410.7Link to Ensembl Protein Viewer:ENSMUSP00000112866.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122410Re-query CCDS DB by Protein ID:ENSMUSP00000112866
Original member Current member EBI ENSMUST00000179395.7 ENSMUSP00000137304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179395.7Link to Ensembl Protein Viewer:ENSMUSP00000137304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179395Re-query CCDS DB by Protein ID:ENSMUSP00000137304
Original member Current member NCBI NM_001170907.1 NP_001164378.1 Accepted alive Link to Nucleotide Sequence:NM_001170907.1Link to Protein Sequence:NP_001164378.1Re-query CCDS DB by Nucleotide ID:NM_001170907Re-query CCDS DB by Protein ID:NP_001164378Link to BLAST:NP_001164378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164378.1 539 Q9QXN3-2 539 100% 0 0

Chromosomal Locations for CCDS 52838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65833404 65833448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65851367 65851458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65852826 65852950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65857324 65857511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65858246 65858372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65864204 65864419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65866472 65866601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65873099 65873177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65874831 65875043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65879075 65879208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65880891 65881060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65884928 65885028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCGGTGGCTGGGGCGGCGTACCGGGAGCCGCTAGTACACTGGTGCACACAGCAGTTGCAAAAAACTT
TCGCCCTGGATGTCAGCGAGGAAATCATACAATATGTTTTGTCAATTGAGAATGCTGAAGAAATACGAGA
ATATGTGACAGACCTTCTCCAGGGAAATGAGGGCAAAAAGGGTCAATTCATAGAAGATCTTATAACCAAA
TGGCAAAAGAATGATCAAGAGTTCATCTCTGATTCCTTTCAACAGTGCTTGAGAAAAGATGAAATTTTAG
ATGGACAGAGATCAGTGGACCAGCTAAAGCGGAGTAGGAGGAAAGGACGAAACAAACAGGAAGTTCCTGC
ATTTCCTGAACCTGACGTAGCTGTGGAGGTCAAAACACCTTTAGATTTGGCTAAGGCACAAGAAAGCAAC
AACTCCGTAAAGAAGAAGACAAGATTTGTCAATTTATATACAAGAGAGGGACAGGACAAACTTGCAGTCC
TGCTTCCTGGTCGTCACCCGTGTGATTGCCTGGGCCAGAAGCACAAACTCATCAATAACTGTCTGGTCTG
TGGGCGGATCGTTTGTGAGCAGGAGGGTTCAGGCCCCTGCTTGTTCTGTGGCTCTTTGGTGTGTACTAAT
GAAGAACAGGATATTTTACAGCGGGACTCAAACAAAAGTCAGAAACTGCTGAAGAAGCTCATGTCAGGGG
CAGAGACTTCTGGAAAGGTGGACGTCTCTACCAAGGACCTACTTCCTCATCAAGAATCCCGAATGAAGTC
TGGTTTGGAGAAGGCTATCAAGCATAAGGAAAAACTGTTAGAGTTCGACAGAACGAGTATCCGAAGGACC
CAAGTTATTGACGATGAATCAGATTACTTTGCCAGTGATTCTAACCAGTGGCTGTCCAAAGTTGAGCGAG
AAATGCTGCAGAAACGAGAGGAGGAGCTGAGAGAACTCCGACATGCCTCCAGACTTTCTAAGAAAGTGAC
CATTGACTTCGCGGGGCGGAAGATCCTAGAAGATGAAAATCCACTAGCAGAGTATCACAGCAGACTAGAT
GAGACAATACAAGCCATTGCCAGTGGGACTTTGAACCAGTCACTGGTCACGTTGGATAGATCTTGTGAAG
AGCCTTTGGGAGTTCTGGTAAACCCTAACATGTACCAGGCCTCTCCTCAGTGGGTTGACAACACTGGCTC
AACCCCACAGAAGAAGACTTCACTCTCGGCAGGACCAAGACTAGAGCCCAGTTTACATCAGCACCAGCTG
CGAATCCAGGACCAAGAATTCCAGGAAGGCTTTGATGGCGGCTGGTGCCTGTCTATGCATCAGCCCTGGG
CTTCTCTGCTTGTCAGGGGGATTAAAAGGGTGGAGGGCAGATCCTGGTATACTCCTCACAGAGGAAGACT
TTGGATAGCAGCCACGGGCAAAAGACCTTCCCCTCAGGAAGTCTCAGAACTCCAGGCTACCTATCGTCTT
CTTCGTGGGAAAGATGTGGAGTTTCCAAATGACTATCCGTCGGGTTGTCTTCTGGGCTGTGTGGACCTTA
TTGATTGCTTGTCCCAGAAACAATTTCAGGAGCAGGGAAACTGGATTCCAAGATCCATCAAGGAGCAAAG
AAGGGGTTAA

Translation (539 aa):
MAVAGAAYREPLVHWCTQQLQKTFALDVSEEIIQYVLSIENAEEIREYVTDLLQGNEGKKGQFIEDLITK
WQKNDQEFISDSFQQCLRKDEILDGQRSVDQLKRSRRKGRNKQEVPAFPEPDVAVEVKTPLDLAKAQESN
NSVKKKTRFVNLYTREGQDKLAVLLPGRHPCDCLGQKHKLINNCLVCGRIVCEQEGSGPCLFCGSLVCTN
EEQDILQRDSNKSQKLLKKLMSGAETSGKVDVSTKDLLPHQESRMKSGLEKAIKHKEKLLEFDRTSIRRT
QVIDDESDYFASDSNQWLSKVEREMLQKREEELRELRHASRLSKKVTIDFAGRKILEDENPLAEYHSRLD
ETIQAIASGTLNQSLVTLDRSCEEPLGVLVNPNMYQASPQWVDNTGSTPQKKTSLSAGPRLEPSLHQHQL
RIQDQEFQEGFDGGWCLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATGKRPSPQEVSELQATYRL
LRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFQEQGNWIPRSIKEQRRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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