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Report for CCDS52306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52306.1 Public Mus musculus 7 Ccdc81 23 108 98 CCDS HistoryNCBI Gene:70884Re-query CCDS DB by CCDS ID:52306.1Re-query CCDS DB by GeneID:70884See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041195.5 ENSMUSP00000044087.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041195.5Link to Ensembl Protein Viewer:ENSMUSP00000044087.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041195Re-query CCDS DB by Protein ID:ENSMUSP00000044087
Original member Current member NCBI NM_001162979.1 NP_001156451.1 Accepted alive Link to Nucleotide Sequence:NM_001162979.1Link to Protein Sequence:NP_001156451.1Re-query CCDS DB by Nucleotide ID:NM_001162979Re-query CCDS DB by Protein ID:NP_001156451Link to BLAST:NP_001156451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156451.1 654 Q9D5W4 654 100% 0 0

Chromosomal Locations for CCDS 52306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 89866505 89866646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89869621 89869746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89875675 89875895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89876089 89876167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89877404 89877576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89880128 89880232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89881614 89881760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89882292 89882382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89886146 89886269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89887682 89887803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89890392 89890471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89893112 89893368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89896697 89896853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89898038 89898099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89903182 89903260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGCTGGACAGGGTTGGGCCAGGTTTTCAGGACCTGTGCAGGCAAGTGCTGCCCACACTGCCGACGCTGA
GCCAAGAGGAAGTCTCTACTATCTGGGCGAATGTTTCAGATTTTGTGGAACGACAGCTAACTATGCACAA
GGGTGTTCAGATTTCAGGACTTGGAACTTTCACTTTCTCAAGGCAGCAGCTTGAGGTGGGAAACAAGAAG
TTTGTTCTAGTGCAGAGGCCGGTGTTTATCATGGCAGAGAAGTTAGTGCAGACCCACGGACTCAAACAAA
ACAAAGTATTTTCTCCTGGTGATATTCCAGTTGTTCCACTTAATTTTGTCATGATATCCCTGGAGGGTCC
ATTTAACAGGGATACAATAGAAGGGTGTGTTAAGGAGACACTACTTTTTTTATCGAGATCCATTTCCGTC
AAACAAAAAGTGGAGTTCACATTCAAAGGAATTGGGGTCCTTTCGATCAGAGACAGCAAAGTGAAGATGA
GATTTTATAAGGACTTCCTCTGTTCGATGGATGGAAGTGGCATCTTGACTAAAGCCCTTGCGAATAGGCC
TGGCACCATGGACTCGGTGCTGTCTAGCAGAGAGTCCTACAGAAAGCGTCCCAACAGTGCGATGGCCTTT
CCAAGGATTGAGCACAAAGAGACAGAGAACAAAACACCCGTGGAGGTCGTTGGAGAGGAAGGCGGAGAGA
ACAGACCAAGGAAGATCAAGTTGAAAGACCAGTCAGACAAAGAAGGAGGAGCCAGGGAGATATCATCACC
CAAGAAACACCGTGAGAGGCAATCTATCTCTCCTGCTAAAGTGACAAGCGTCAGCTTGCTGGACAAGTTT
GAGCGAAGTGGGAACGGTGGGAAGATCACGGCCTGTGAAAACTTGTCATCTCCAGGTTGTCAGAGAAACG
ACAATGAGAGGCCCAGAACATCTCCTGCCCCAGCTTGCCAGGATCATAATAAGGCAGGACAGGAAATGTG
CTATGTGTGTTTGCAACGAGCACAACGGAATTTCGCATTGCACTATGGAGATGAGAGGAGGAGGAGAGAG
ATTGAAGATGAGCGACTTATGCAACAGTACCAAATCCTGAAAGATCAGGAGGCTTTCTTCAAAAACCAGG
TGAAGGGCATGGCTGCTAGGGAGCAGAACCAGAAGAACGCTGCCTATAACCTCGGAGTTGCTGAAGCTAT
CAGGAATCACAAGAACGAGAAACCCGAATTCTATAAATCCTTCCTCTTTGATAAGCGACCTCTTAGTCCT
GAGATTAACGCTTTTAAGCAGGAGGAATATTCCCAAAGTCTCCTGAAACAAATGGAAAGCAAACGGGAGA
AGGAAATAAAGCAAAGACAAAACAGAGAGTTGATGGACCGCTTGGAGCAAGTGCAGCTCACAGAGGAACT
TGCTGCACAAAGAGCTCAATATCTAAAAGAGAAGATGGAAGAAACACAGCACTACAAGAGAGCTTTGGAT
GCACAGGTAAAGAACAAACCCCCCCAGCTGCCCATGTTTGAGCCAGACTCTGCTGAGCCCATCTTTGGTA
AGAATGACGGAGAAAGGGAGATGGAAAAGCGAAAGCGAGAGCAGAGCTGCATGAAGCATCAGATGGAGGC
AGCCGCCAGCCACAAGAGGAACACCATCCTGAACCAGCTGGTGGACCAGAGGCGAGATCTGCAGATGCTT
CAGAGGACACAGAGAGAGCACATGGCAGACAGAGCTGCTGAGATGGATCGAGTGAACAGACTCAACCAGT
GCTTGCAAGAGGACTGGGACAGGAGCCTGGCCATGAAGAAGCAGCGGGACGTGGAGGAAAAGGCCTTTGA
GCGGGCTTCGGACAAGCTGTTTCTCTTGGATCAGTGTGAGAAGTATCGGCGCTGCAGGCAGTGCCAGAGG
CGCACCTGCAACACGGGCGAGAGCAACTTGTGGCCCATGAATAAGTTCCTGCAGGGCTCACGATTGCTCG
TGTAG

Translation (654 aa):
MLDRVGPGFQDLCRQVLPTLPTLSQEEVSTIWANVSDFVERQLTMHKGVQISGLGTFTFSRQQLEVGNKK
FVLVQRPVFIMAEKLVQTHGLKQNKVFSPGDIPVVPLNFVMISLEGPFNRDTIEGCVKETLLFLSRSISV
KQKVEFTFKGIGVLSIRDSKVKMRFYKDFLCSMDGSGILTKALANRPGTMDSVLSSRESYRKRPNSAMAF
PRIEHKETENKTPVEVVGEEGGENRPRKIKLKDQSDKEGGAREISSPKKHRERQSISPAKVTSVSLLDKF
ERSGNGGKITACENLSSPGCQRNDNERPRTSPAPACQDHNKAGQEMCYVCLQRAQRNFALHYGDERRRRE
IEDERLMQQYQILKDQEAFFKNQVKGMAAREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSP
EINAFKQEEYSQSLLKQMESKREKEIKQRQNRELMDRLEQVQLTEELAAQRAQYLKEKMEETQHYKRALD
AQVKNKPPQLPMFEPDSAEPIFGKNDGEREMEKRKREQSCMKHQMEAAASHKRNTILNQLVDQRRDLQML
QRTQREHMADRAAEMDRVNRLNQCLQEDWDRSLAMKKQRDVEEKAFERASDKLFLLDQCEKYRRCRQCQR
RTCNTGESNLWPMNKFLQGSRLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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