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Report for CCDS52300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52300.1 Public Mus musculus 7 Folh1 23 108 98 CCDS HistoryNCBI Gene:53320Re-query CCDS DB by CCDS ID:52300.1Re-query CCDS DB by GeneID:53320See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107271.9 ENSMUSP00000102892.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107271.9Link to Ensembl Protein Viewer:ENSMUSP00000102892.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107271Re-query CCDS DB by Protein ID:ENSMUSP00000102892
Original member Current member NCBI NM_001159706.1 NP_001153178.1 Accepted alive Link to Nucleotide Sequence:NM_001159706.1Link to Protein Sequence:NP_001153178.1Re-query CCDS DB by Nucleotide ID:NM_001159706Re-query CCDS DB by Protein ID:NP_001153178Link to BLAST:NP_001153178.1

Chromosomal Locations for CCDS 52300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86719659 86719848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86723276 86723368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86725409 86725490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86725883 86726147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86729074 86729164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86731726 86731817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86734092 86734159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86736449 86736512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86742171 86742253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86744371 86744490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86746112 86746197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86756938 86757031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86761701 86761887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86762917 86763042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86768136 86768237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86771703 86771889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86773198 86773306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86775639 86775759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGTGGAACGCACTGCAGGACAGAGACTCCGCGGAGGTCCTGGGACACCGCCAGCGCTGGCTCCGTGTTG
GGACACTGGTGCTGGCTTTAACCGGAACCTTCCTCATTGGCTTCCTCTTTGGGTGGTTTATAAAACCTTC
CAATGAAGCTACTGGTAATGTTTCCCATTCTGGCATGAAGAAGGAGTTTTTGCATGAATTGAAGGCTGAG
AACATCAAAAAATTTTTATACAATTTCACACGGACACCACACTTGGCAGGAACACAAAATAATTTTGAGC
TTGCAAAGCAAATTCATGACCAGTGGAAAGAATTTGGCCTGGATTTGGTTGAGTTATCCCATTACGATGT
CTTGCTGTCCTATCCAAATAAAACTCATCCTAACTATATCTCAATAATTAATGAAGATGGAAATGAGATT
TTCAAAACATCATTATCTGAACAGCCACCCCCAGGATATGAGAATATATCAGATGTAGTGCCACCATACA
GTGCCTTCTCTCCACAAGGGACACCAGAGGGTGATCTAGTGTATGTCAACTATGCACGAACTGAAGACTT
CTTTAAACTGGAACGGGAAATGAAGATCAGTTGTTCTGGGAAGATTGTGATTGCCAGATATGGGAAAGTG
TTCAGAGGAAATATGGTTAAAAATGCTCAACTGGCAGGGGCAAAAGGAATGATTCTGTACTCAGACCCTG
CTGACTACTTTGTTCCTGCGGTGAAGTCCTATCCAGATGGCTGGAACCTCCCTGGAGGTGGTGTCCAACG
TGGAAATGTCTTAAATCTTAATGGTGCAGGTGACCCGCTCACACCAGGTTACCCAGCAAATGAACATGCT
TATAGGCATGAGTTGACAAACGCTGTTGGCCTTCCAAGTATTCCTGTCCATCCTATTGGATATGATGATG
CACAGAAACTCTTAGAAAAGGTCAAGATGCATATTCACTCTTACACTAAAGTGACAAGAATCTATAATGT
CATTGGCACCCTCAAAGGAGCTCTGGAACCAGACAGATATGTTATTCTTGGAGGTCACCGAGATGCTTGG
GTATTTGGTGGCATTGACCCTCAGAGTGGAGCAGCTGTTGTTCATGAAATTGTGCGGAGCTTTGGAACCC
TGAAGAAGAAAGGACGGAGGCCTAGAAGGACAATTTTGTTTGCAAGCTGGGATGCAGAAGAATTTGGCCT
TCTTGGTTCTACTGAGTGGGCAGAGGAACATTCAAGACTCCTACAAGAGCGAGGTGTGGCTTATATTAAT
GCTGATTCTTCCATAGAAGGAAATTACACTCTAAGAGTTGATTGCACACCACTGATGTACAGCTTAGTGT
ACAACCTAACAAAAGAGCTGCAAAGCCCAGATGAAGGTTTTGAAGGAAAATCTCTTTATGACAGCTGGAA
AGAAAAGAGTCCTTCACCTGAGTTCATTGGAATGCCCAGAATTAGCAAGCTGGGGTCTGGCAATGATTTT
GAAGTGTTCTTCCAAAGACTTGGAATTGCTTCAGGCAGAGCCCGATATACTAAAAATTGGAAAACTAACA
AAGTCAGCAGCTATCCTCTCTATCACAGTGTCTATGAAACATATGAGCTGGTAGTAAAATTTTATGACCC
AACATTTAAATACCACCTCACTGTGGCCCAGGTTCGAGGAGCGATGGTATTTGAACTTGCCAATTCTATA
GTGCTTCCCTTTGACTGCCAAAGTTATGCTGTAGCTCTGAAGAAGTATGCTGACACTATCTACAATATTT
CAATGAAACATCCACAAGAAATGAAGGCTTACATGATATCATTTGATTCACTGTTTTCTGCAGTCAATAA
TTTTACAGATGTTGCATCTAAGTTCAATCAGAGACTGCAAGAGTTAGACAAAAGCAACCCCATATTACTG
AGAATTATGAATGACCAGCTGATGTATCTGGAACGTGCATTCATTGATCCTTTAGGCTTACCAGGAAGGC
CTTTCTACAGGCATATCATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGAGAATCATTCCCTGGGAT
TTATGATGCCCTTTTTGATATAAGTAGCAAAGTCAATGCTTCTAAGGCCTGGAACGAAGTGAAGAGACAG
ATTTCTATTGCAACCTTTACAGTGCAAGCTGCAGCAGAGACTCTGAGGGAAGTAGCTTAA

Translation (719 aa):
MWNALQDRDSAEVLGHRQRWLRVGTLVLALTGTFLIGFLFGWFIKPSNEATGNVSHSGMKKEFLHELKAE
NIKKFLYNFTRTPHLAGTQNNFELAKQIHDQWKEFGLDLVELSHYDVLLSYPNKTHPNYISIINEDGNEI
FKTSLSEQPPPGYENISDVVPPYSAFSPQGTPEGDLVYVNYARTEDFFKLEREMKISCSGKIVIARYGKV
FRGNMVKNAQLAGAKGMILYSDPADYFVPAVKSYPDGWNLPGGGVQRGNVLNLNGAGDPLTPGYPANEHA
YRHELTNAVGLPSIPVHPIGYDDAQKLLEKVKMHIHSYTKVTRIYNVIGTLKGALEPDRYVILGGHRDAW
VFGGIDPQSGAAVVHEIVRSFGTLKKKGRRPRRTILFASWDAEEFGLLGSTEWAEEHSRLLQERGVAYIN
ADSSIEGNYTLRVDCTPLMYSLVYNLTKELQSPDEGFEGKSLYDSWKEKSPSPEFIGMPRISKLGSGNDF
EVFFQRLGIASGRARYTKNWKTNKVSSYPLYHSVYETYELVVKFYDPTFKYHLTVAQVRGAMVFELANSI
VLPFDCQSYAVALKKYADTIYNISMKHPQEMKAYMISFDSLFSAVNNFTDVASKFNQRLQELDKSNPILL
RIMNDQLMYLERAFIDPLGLPGRPFYRHIIYAPSSHNKYAGESFPGIYDALFDISSKVNASKAWNEVKRQ
ISIATFTVQAAAETLREVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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