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Report for CCDS52249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52249.1 Public Mus musculus 7 Cyth2 23 108 98 CCDS HistoryNCBI Gene:19158Re-query CCDS DB by CCDS ID:52249.1Re-query CCDS DB by GeneID:19158See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107729.9 ENSMUSP00000103357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107729.9Link to Ensembl Protein Viewer:ENSMUSP00000103357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107729Re-query CCDS DB by Protein ID:ENSMUSP00000103357
Original member NCBI NM_001112701.1 NP_001106171.1 Updated not alive Link to Nucleotide Sequence:NM_001112701.1Link to Protein Sequence:NP_001106171.1Re-query CCDS DB by Nucleotide ID:NM_001112701Re-query CCDS DB by Protein ID:NP_001106171
Current member NCBI NM_001112701.2 NP_001106171.1 Accepted alive Link to Nucleotide Sequence:NM_001112701.2Link to Protein Sequence:NP_001106171.1Re-query CCDS DB by Nucleotide ID:NM_001112701Re-query CCDS DB by Protein ID:NP_001106171Link to BLAST:NP_001106171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106171.1 399 P63034-2 399 99.7494% 0 1

Chromosomal Locations for CCDS 52249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45807761 45807848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45807933 45808087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45808176 45808247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45808373 45808449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45810127 45810238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45810571 45810719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45810854 45810966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45811529 45811609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45812180 45812298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45812847 45812913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45813009 45813156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45814098 45814116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGAGGACGGTGTCTACGAGCCCCCAGACTTGACTCCAGAGGAGCGCATGGAGTTGGAGAACATCCGGC
GGCGCAAGCAGGAGCTGCTGGTGGAGATCCAGCGCCTGCGAGAAGAGCTAAGTGAAGCTATGAGCGAGGT
GGAGGGTCTGGAGGCCAATGAGGGCAGTAAGACCTTGCAGCGGAACCGGAAGATGGCAATGGGCAGGAAG
AAATTCAACATGGACCCCAAAAAGGGGATCCAATTCTTGGTGGAGCATGAACTTCTGCAGAACACGCCTG
AGGAAATTGCCCGCTTCCTGTACAAGGGCGAGGGGCTGAACAAGACAGCCATTGGGGACTACCTAGGGGA
AAGGGAAGAGCTGAACCTGTCTGTGCTCCATGCTTTTGTGGATCTCCATGAGTTCACCGACCTCAACCTG
GTGCAGGCCCTCCGGCAATTCCTATGGAGCTTTCGCCTCCCTGGAGAGGCTCAGAAAATTGATCGAATGA
TGGAGGCCTTTGCCCAGAGATACTGCTTATGCAACCCTGGGGTCTTCCAGTCTACAGACACCTGCTACGT
GTTGTCCTTTGCCGTGATCATGCTGAACACCAGCCTTCACAATCCCAATGTCAGGGACAAGCCGGGCCTG
GAGCGCTTTGTGGCCATGAACCGGGGCATCAACGAGGGTGGGGATCTGCCTGAGGATCTTCTCAGGAACC
TCTACGACAGCATCCGGAACGAGCCCTTCAAAATCCCAGAGGATGATGGGAATGATCTCACCCACACCTT
CTTCAACCCAGACCGAGAGGGCTGGCTCCTAAAGCTGGGGGGCCGGGTGAAGACTTGGAAGCGGCGCTGG
TTCATCCTTACAGACAACTGCCTCTACTACTTTGAATACACTACGGACAAGGAGCCCCGAGGGATTATCC
CCCTAGAGAACCTGAGCATCCGGGAGGTGGACGATCCTCGGAAGCCGAACTGCTTTGAGCTTTACATTCC
CAACAATAAGGGACAGCTCATCAAAGCCTGCAAAACAGAGGCTGACGGCCGGGTAGTGGAGGGGAACCAC
ATGGTGTACCGAATCTCAGCACCCACCCAGGAGGAGAAAGATGAGTGGATCAAATCCATCCAGGCTGCTG
TAAGTGTGGACCCCTTCTATGAGATGTTGGCAGCAAGAAAGAAGCGAATTTCTGTGAAGAAGAAGCAAGA
ACAACCCTGA

Translation (399 aa):
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRK
KFNMDPKKGIQFLVEHELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLSVLHAFVDLHEFTDLNL
VQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGL
ERFVAMNRGINEGGDLPEDLLRNLYDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRW
FILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNH
MVYRISAPTQEEKDEWIKSIQAAVSVDPFYEMLAARKKRISVKKKQEQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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