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Report for CCDS51893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51893.1 Public Mus musculus 6 Clec4b1 23 108 98 CCDS HistoryNCBI Gene:69810Re-query CCDS DB by CCDS ID:51893.1Re-query CCDS DB by GeneID:69810See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078559.4 ENSMUSP00000077636.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078559.4Link to Ensembl Protein Viewer:ENSMUSP00000077636.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078559Re-query CCDS DB by Protein ID:ENSMUSP00000077636
Original member Current member NCBI NM_001190310.1 NP_001177239.1 Accepted alive Link to Nucleotide Sequence:NM_001190310.1Link to Protein Sequence:NP_001177239.1Re-query CCDS DB by Nucleotide ID:NM_001190310Re-query CCDS DB by Protein ID:NP_001177239Link to BLAST:NP_001177239.1

Chromosomal Locations for CCDS 51893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123050098 123050122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123050611 123050700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123065939 123066037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123068437 123068594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123069656 123069768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123071393 123071537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGTTCAGGAAAGACAGCTACAAGGGAAGGCAGTCTCCTGGTCCCTGAGACTCTGGTCAGCTGCTGTGA
TTTCTATCTTACTCCTCAGCACCTGTTTCATTGCGAGCTGTGTGGTCACTTACCAGTTTAGTATGGACAA
GCCAAATAGAAGACTATCTGAACTTGACAGGTACCATTCATTGACCTGCTTCAGTGAAGGGAATATGGTG
TCAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAGCTATTTGGTTCCCACTGCTACTTGGTTCCCA
CAGTTTTTTCATCAGCATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCATGGGTGCTCATCTAGTGGT
GATCCATAGCCAGGAGGAGCAGGATTTCATCACTGGGATCTTGGACATTCATGCTGCTTATTTTATAGGG
TTGTGGGATACAGGCCATCGGCAATGGCAATGGGTTGATCAGACACCATATGAAGAAAGTGTCACATTCT
GGCACAATGGTGAGCCCAGCAGTGACAATGAAAAATGTGTTACAGTATATTACCGTCGGAATATTGGATG
GGGCTGGAATGATATCTCTTGCAATCTTAAACAGAAGTCAGTTTGTCAGATGAAGAAAATAAACTTATGA

Translation (209 aa):
MVQERQLQGKAVSWSLRLWSAAVISILLLSTCFIASCVVTYQFSMDKPNRRLSELDRYHSLTCFSEGNMV
SDKVWSCCPKDWKLFGSHCYLVPTVFSSASWNKSEENCSRMGAHLVVIHSQEEQDFITGILDIHAAYFIG
LWDTGHRQWQWVDQTPYEESVTFWHNGEPSSDNEKCVTVYYRRNIGWGWNDISCNLKQKSVCQMKKINL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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