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Report for CCDS51234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51234.1 Public Mus musculus 4 Nfia 23 108 98 CCDS HistoryNCBI Gene:18027Re-query CCDS DB by CCDS ID:51234.1Re-query CCDS DB by GeneID:18027See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092532.12 ENSMUSP00000130032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092532.12Link to Ensembl Protein Viewer:ENSMUSP00000130032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000092532Re-query CCDS DB by Protein ID:ENSMUSP00000130032
Original member Current member NCBI NM_001122953.1 NP_001116425.1 Accepted alive Link to Nucleotide Sequence:NM_001122953.1Link to Protein Sequence:NP_001116425.1Re-query CCDS DB by Nucleotide ID:NM_001122953Re-query CCDS DB by Protein ID:NP_001116425Link to BLAST:NP_001116425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116425.1 466 Q02780-5 466 100% 0 0

Chromosomal Locations for CCDS 51234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 97777968 97777994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 97783082 97783613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 97956374 97956439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98000392 98000466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98014213 98014330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98020827 98020954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98063013 98063191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98065281 98065446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98081725 98081816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98111218 98111235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGTATTCTCCGCTCTGTCTCACCCAGGATGAGTTTCATCCTTTCATTGAAGCACTTCTGCCCCATGTCC
GCGCCTTCGCCTACACATGGTTCAACCTGCAGGCCCGAAAGCGGAAATACTTCAAAAAACATGAGAAGCG
CATGTCGAAAGAAGAGGAGAGGGCCGTGAAGGATGAACTGCTAAGCGAGAAGCCCGAGGTCAAGCAGAAG
TGGGCTTCCCGACTTCTGGCCAAGTTACGGAAAGATATCCGACCCGAGTACCGAGAGGATTTTGTTCTTA
CAGTTACAGGGAAAAAACCTCCATGCTGTGTTCTTTCCAACCCTGATCAGAAAGGCAAGATGCGGAGAAT
TGACTGCCTCCGCCAGGCAGATAAAGTATGGAGGTTGGACCTCGTCATGGTGATCTTGTTCAAAGGTATT
CCGCTGGAAAGTACTGATGGCGAGCGCCTTGTAAAGAGTCCACAGTGCTCTAATCCAGGGCTCTGTGTCC
AGCCCCATCACATAGGGGTTTCTGTAAAGGAACTCGATTTATATTTGGCATACTTTGTACATGCAGCAGA
TTCAAGTCAATCTGAAAGTCCCAGCCAGCCAAGTGAAGCTGACATTAAGGACCAGCCAGAAAATGGACAT
TTGGGCTTCCAGGACAGCTTTGTCACATCAGGTGTTTTCAGTGTGACTGAGCTAGTAAGAGTGTCACAAA
CACCAATAGCTGCAGGAACCGGCCCCAATTTTTCTCTCTCTGATTTGGAAAGTTCTTCATACTACAGCAT
GAGTCCAGGAGCAATGAGGAGGTCTCTGCCCAGCACATCCTCTACCAGCTCTACAAAGCGCCTCAAGTCT
GTGGAGGATGAAATGGACAGTCCTGGTGAAGAACCATTTTACACAGGCCAAGGGCGCTCCCCAGGGAGTG
GCAGCCAGTCCAGTGGATGGCATGAAGTAGAGCCAGCAAGTCCACATGCGACGCCATCGACTCTCCACTT
TCCAACGTCACCCATCATCCAGCAGCCTGGGCCTTACTTCTCACACCCAGCCATCCGTTACCACCCTCAG
GAGACGCTGAAAGAGTTTGTCCAACTTGTCTGTCCTGATGCTGGTCAGCAAGCTGGACAGGTGGGGTTCC
TCAATCCCAATGGAAGCAGTCAAGGCAAGGTGCACAACCCATTCCTCCCCACCCCAATGTTGCCGCCGCC
GCCACCACCACCGATGGCCAGGCCTGTGCCTCTGCCCATGCCAGACACCAAGCCTCCAACCACATCAACA
GAAGGAGGTGCAGCCTCCCCCACCTCACCGACCTACTCGACACCCAGCACCTCCCCCGCAAACCGATTCG
TCAGTGTTGGACCACGGGATCCAAGCTTTGTAAATATCCCTCAACAGACACAGTCCTGGTACCTGGGATA
A

Translation (466 aa):
MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQK
WASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGI
PLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGH
LGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKS
VEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQ
ETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTST
EGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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