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Report for CCDS5121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5121.1 Public Homo sapiens 6 MCM9 24 110 108 CCDS HistoryNCBI Gene:254394Re-query CCDS DB by CCDS ID:5121.1Re-query CCDS DB by GeneID:254394See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316068.7 ENSP00000312870.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000316068.7Link to Ensembl Protein Viewer:ENSP00000312870.3Re-query CCDS DB by Nucleotide ID:ENST00000316068Re-query CCDS DB by Protein ID:ENSP00000312870
Original member Current member NCBI NM_001378358.1 NP_001365287.1 Accepted alive Link to Nucleotide Sequence:NM_001378358.1Link to Protein Sequence:NP_001365287.1Re-query CCDS DB by Nucleotide ID:NM_001378358Re-query CCDS DB by Protein ID:NP_001365287Link to BLAST:NP_001365287.1
Original member Current member NCBI NM_153255.5 NP_694987.1 Accepted alive Link to Nucleotide Sequence:NM_153255.5Link to Protein Sequence:NP_694987.1Re-query CCDS DB by Nucleotide ID:NM_153255Re-query CCDS DB by Protein ID:NP_694987Link to BLAST:NP_694987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365287.1 391 Q9NXL9-3 391 100% 0 0
NP_694987.1 391 Q9NXL9-3 391 100% 0 0

Chromosomal Locations for CCDS 5121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118911624 118911769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118913295 118913420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118917561 118917761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118922005 118922086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118923811 118924127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118931420 118931723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGAATAGCGATCAAGTTACACTGGTTGGTCAAGTGTTTGAGTCATATGTTTCGGAATACCATAAGAATG
ATATTCTTCTAATCTTGAAGGAAAGGGATGAAGATGCTCATTACCCAGTTGTGGTTAATGCCATGACTCT
GTTTGAGACCAACATGGAAATCGGGGAATATTTCAACATGTTCCCCAGTGAAGTGCTTACAATTTTTGAT
AGTGCACTGCGAAGGTCAGCCTTGACAATTCTCCAGTCCCTTTCTCAGCCTGAGGCTGTTTCCATGAAAC
AGAATCTTCATGCCAGGATATCAGGTTTGCCTGTCTGTCCTGAGCTGGTGAGGGAACACATACCTAAAAC
CAAGGATGTGGGACACTTTTTATCTGTCACTGGGACAGTGATTCGAACAAGTCTGGTGAAGGTTCTGGAG
TTTGAGCGGGATTACATGTGTAACAAATGCAAGCATGTGTTTGTGATCAAGGCTGACTTTGAGCAGTATT
ACACCTTTTGCCGGCCATCCTCGTGTCCCAGCTTGGAGAGCTGTGATTCCTCTAAATTCACTTGCCTCTC
AGGCTTGTCTTCGTCTCCAACCAGGTGTAGAGATTACCAGGAAATCAAAATTCAGGAACAGGTTCAAAGG
CTATCTGTTGGAAGTATTCCACGATCTATGAAGGTTATTCTGGAAGATGACTTAGTGGATAGTTGCAAAT
CTGGTGATGACCTCACTATTTACGGGATTGTAATGCAACGGTGGAAGCCCTTTCAGCAAGATGTGCGCTG
TGAAGTGGAGATAGTCCTGAAAGCAAATTACATCCAAGTAAATAATGAGCAGTCCTCAGGGATCATCATG
GATGAGGAGGTCCAAAAGGAATTCGAAGATTTTTGGGAATACTATAAGAGCGATCCCTTTGCAGGAAGGA
ATGTAATATTGGCTAGCTTGTGCCCTCAAGTGTTTGGAATGTATCTAGTAAAGCTTGCTGTGGCCATGGT
GCTGGCTGGTGGGATTCAAAGGACTGATGCTACAGGAACACGGGTCAGAGGAGAATCTCATCTTTTATTG
GTTGGGGATCCTGGCACAGGGAAATCTCAGTTCCTCAAATATGCAGCAAAGATTACACCAAGATCTGTGC
TGACCACAGGAATTGGATCTACTAGTGCAGGTATTGTATGTGACAATTTCAAGTAA

Translation (391 aa):
MNSDQVTLVGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFD
SALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLE
FERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQR
LSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCEVEIVLKANYIQVNNEQSSGIIM
DEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLL
VGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGIVCDNFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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