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Report for CCDS51067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51067.1 Public Mus musculus 3 Alpk1 23 108 98 CCDS HistoryNCBI Gene:71481Re-query CCDS DB by CCDS ID:51067.1Re-query CCDS DB by GeneID:71481See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029662.11 ENSMUSP00000029662.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029662.11Link to Ensembl Protein Viewer:ENSMUSP00000029662.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029662Re-query CCDS DB by Protein ID:ENSMUSP00000029662
Original member Current member EBI ENSMUST00000198955.4 ENSMUSP00000143223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198955.4Link to Ensembl Protein Viewer:ENSMUSP00000143223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198955Re-query CCDS DB by Protein ID:ENSMUSP00000143223
Original member Current member NCBI NM_027808.1 NP_082084.1 Accepted alive Link to Nucleotide Sequence:NM_027808.1Link to Protein Sequence:NP_082084.1Re-query CCDS DB by Nucleotide ID:NM_027808Re-query CCDS DB by Protein ID:NP_082084Link to BLAST:NP_082084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082084.1 1231 Q9CXB8 1231 98.7002% 0 16

Chromosomal Locations for CCDS 51067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127670932 127671131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127672360 127672546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127673320 127673482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127677686 127677839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127679361 127681452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127683508 127683612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127684342 127684437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127685238 127685314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127686257 127686343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127687582 127687641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127695554 127695752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127724375 127724529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127729271 127729391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3696 nt):
ATGAATAATCAAGATGCCGTGGCTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTCTTGTTGG
AAACGCCAGATGTGTCTACAGAGGACAAGAGTGAGGACCAGCGGTGCAGAGCTTCACTCCCCAGCGAGTT
AAGGACCCTGATCCAGGAGGCAGAGGAAATGAAGTGGCCCTTCGTGCCTGAAAAGTGGCAATACAAACAA
GCCATGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGG
CCTTGCGAGCCTCCATCCTTGTCCAGGACTGCGCTGCCGCCTCCGCTATTGTCTTCTTGATGGACCGGTT
CCTGTATGGACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCA
ACGCCCATCGCCCCGCAGGTGGTCATCCGACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGTTGAAGG
CAGAATACATCCTGAGCAGCCTGATAAGCAACAACGGAGCAACCGGGACCTGGCTGTATAGGAATGAGAG
TGACAAAGTCCTGGTACAGTCGGTCTGCATACAGATCAGAGGGCAGATTCTGCAGAAGCTAGGCATGTGG
TATGAAGCGGCAGAATTGATATGGGCCTCTGTCATAGGATATCTGACACTCCCTCAGCCAGATAAGAAGG
GCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCATGAGCAAAACCGATTATGAAAAGTT
TAAGAAGAGCCCAAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAA
GCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTACACACCCCTCTTTGTGCTCACGGCTGTGAATATCCGTG
GCACATGTTTGTTGTCATATAGCTGTTCTGCTGACTGCCCTCCGGGAATGAAAAGTGTGCATCTGTGTGA
AGCCAAAGAAGCTTTTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAG
CTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGTGCACTCCAGACTCCATGGGGAGACAGATG
CAGTTCGCGCAGCAAGGCAGCTATGCAGTGAAGCTGTGGGCAAGCTCTACACCTTCAGCACTTCCCCCAC
AAGCCAGGACAGAGAAGGCCTGTCTCAGGAAATCATGTCTCTCATCAGCCAGGTGAAGGGACATCTACGA
GTTCAAAGCTTCCCAAATTTAGATGCTTGCTCTTATGTCCCAGAGAGTTTCAAGTGTGGTTTAGATCGAC
TCATCTTGCATGGACACGTGGATTTCCAACAAATTCTTGAAACCTATTCCCAGCACCATACTTCAGTGTG
TGAGGTATTTGAAAGCACTTGTGGGAACAGCAAACGCAACCAGAGAGACACAAAATCGGAGGTCTGTATT
ACCACTCTGAAGACAGAAACAAACACCGCAGATACTATGGTTGCTACTCTAGAGAGGGTGAGTTCCCAAG
ACAGCAGGAGTACAGCTTCTTCCAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAG
AAGCTGGACCCATTCCAAGGCATTCCGAGTCTCCCTGGATCTAGATATGGAGACTGAGACTGAGCCACCA
AATCACAGCAATGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAGACAACTCTAGCTCCTGTTCTTGGG
GCAGACTGTCAGGGCTCAGCTCTTCCACAAGCTGGGAGGAAGTGAACTGCGCTGTTCAGGATGTAGTAAG
GAAAGGGTCTGGCCAAGAAGAGCATCCTGTGGAGGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAG
AGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCTCTCTTCAGACAACTGGAG
ATGACAACTTAGAGTCTTCACCAAGTCAGTTACACAATCACACATCCATCCTTCCTTTCAATGCAAAAGA
TACTTGTTTGGCCTCGGGTGCAGGACTGGTAGAAACCGCTGAAGGATCTAGCAATACTTCTCTTCAGTCC
AGTCATTCGTGTGGTTCTGATTCCTGGTCCTTGTCTAGTTCAGACAGGTTCACGGATGTGACCACGAATC
CTTCAGTTCAGGAAGAAGAACCCTCTGGAATAATGGGTGATGTCCCAGAATCCAAGTATGACTGTAAAGA
CTGGCACGGAGAAAAGAATGGGGGAACACTCGCTGAAATATGCACAGGGCCTGAATTAACATCTGCCCCC
TCTTCGGTCGACCCAGAAGGAGAAACAGCAGAAAGCACAGACGATGGACTATCACCCTCTCAGGTAGCCC
TGGGATGTTTAGAAGGCAGCCATTCAATGTCTACGCGTAGGACTTTCTTTCCGGATGGGTCGGTTCAAAA
CGCTGACTCAGCAAAGACTGGCTGCTCAGTCAGAGACCAGACTGTCGACCCTGATGCCTCAACGGTGGAT
GAGGAGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGCTCACAGACCACGTG
CTTTGAGGTCCGGTCAGAGTGCGGAGGGGCCAAAGTCCTTTGTAAATGGCTCCAGTCCTTCCCCTATCTT
CGATGAGGACTTCAGCACCACAGAGGAAGGAGAGGAGCTTGGGAGCATGCTGAAGAGCAGCCAAAACTCC
AGCTCATACTCACCATGGTGGCTAAAATCACCAGCCTTTTCCCGCAGTTCGTCAGATGGGGAAAGCTCCT
GGTCTCTGCTGAACTCAAGCAGAAGTTCCTTCGCCTCGCTGGCAGGACAGACCAGTCAAGAGATCCTTGA
GGCTCGAACCCTACAGCCTGATGACCTTGAAAAACTTCTGGCGGGCGTGAGGCATGATTGGCTGCTTCAG
AGACTGGAGAATACTGGCGTTTTGAAGTCCAATCAACTCCAACAAGCCCACAGTGCCCTTCTGCTAAAAT
ATTCCAAAAAGTCTGAGTTGTGGACAGCGCAGGAAACTGTGGTGTATCTGGGAGACTACCTGAAAGTGAA
GAAGAAGGGCAAGCAGAGAAATGCATTTTGGGTCCACTATCTCCATCAAGAGGAAACCCTGGGGAGATAC
GTTGGGAAAGAATACAAAGAGAGGAAGGGGCTCCGGCACCACTTCACTGATGTGGAGCGGCAGATGACAG
CACAGCACTACGTGACAGAGTTTAACAAGAGACTCTACGAGCAAAAGATTCCGACTCAGATATTCTACAT
CCCCTCTACAATATTACTGATTTTGGAAGACAGGACTATAAAGGGATGCATCAGTGTAGAGCCTTACATC
CTGGGGGAATTCGTCAAGTTATCCAATAACACCAAAGCAGTCAAAAATGAGTACAAAGCTACAGAATATG
GCTTGGCCTATGGCCATTTTTCTTATGAGTTTTCTAACCATAGAGATGTGGTGGTTGATTTACAAGGTTG
GGTGACTGGTAATGGAAAAGGCCTGATCTATCTCACGGATCCTCAGATTCACTCTGTAGACCAGAAAGAT
GTCACTACAAACTTTGGAAAGCGGGGAATATTTTACTTCTTTAATAACCAACATGCAAGCTGTAATGAAA
TATGCCATCGTCTTTCTCTGACTAGACCTTCACTAGAGCAAACAAGTAAGGTATAG

Translation (1231 aa):
MNNQDAVASILHECKQVLDRLLLETPDVSTEDKSEDQRCRASLPSELRTLIQEAEEMKWPFVPEKWQYKQ
AMSPEDKTNLQDVIGAGLQQLLAALRASILVQDCAAASAIVFLMDRFLYGLDVSGKLLQVAKGLHKLKPA
TPIAPQVVIRQARVSVNSGKLLKAEYILSSLISNNGATGTWLYRNESDKVLVQSVCIQIRGQILQKLGMW
YEAAELIWASVIGYLTLPQPDKKGISTSLGILADIFVSMSKTDYEKFKKSPKVNLALLKEFDHHLLSASE
ACKLAAAFSAYTPLFVLTAVNIRGTCLLSYSCSADCPPGMKSVHLCEAKEAFEIGLLTKKDGELVSGKQE
LHSFIKAAFGLTTVHSRLHGETDAVRAARQLCSEAVGKLYTFSTSPTSQDREGLSQEIMSLISQVKGHLR
VQSFPNLDACSYVPESFKCGLDRLILHGHVDFQQILETYSQHHTSVCEVFESTCGNSKRNQRDTKSEVCI
TTLKTETNTADTMVATLERVSSQDSRSTASSKMSKKDQGKLQRERGRSWTHSKAFRVSLDLDMETETEPP
NHSNGGTDVFNKSLRDNSSSCSWGRLSGLSSSTSWEEVNCAVQDVVRKGSGQEEHPVEAQSSEAASEEPK
RNRSSRAVYLSSKLRGVSLQTTGDDNLESSPSQLHNHTSILPFNAKDTCLASGAGLVETAEGSSNTSLQS
SHSCGSDSWSLSSSDRFTDVTTNPSVQEEEPSGIMGDVPESKYDCKDWHGEKNGGTLAEICTGPELTSAP
SSVDPEGETAESTDDGLSPSQVALGCLEGSHSMSTRRTFFPDGSVQNADSAKTGCSVRDQTVDPDASTVD
EEGQMLDSTEICSIGQDGAHRPRALRSGQSAEGPKSFVNGSSPSPIFDEDFSTTEEGEELGSMLKSSQNS
SSYSPWWLKSPAFSRSSSDGESSWSLLNSSRSSFASLAGQTSQEILEARTLQPDDLEKLLAGVRHDWLLQ
RLENTGVLKSNQLQQAHSALLLKYSKKSELWTAQETVVYLGDYLKVKKKGKQRNAFWVHYLHQEETLGRY
VGKEYKERKGLRHHFTDVERQMTAQHYVTEFNKRLYEQKIPTQIFYIPSTILLILEDRTIKGCISVEPYI
LGEFVKLSNNTKAVKNEYKATEYGLAYGHFSYEFSNHRDVVVDLQGWVTGNGKGLIYLTDPQIHSVDQKD
VTTNFGKRGIFYFFNNQHASCNEICHRLSLTRPSLEQTSKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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