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Report for CCDS50838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50838.1 Public Mus musculus 2 Phactr3 23 108 98 CCDS HistoryNCBI Gene:74189Re-query CCDS DB by CCDS ID:50838.1Re-query CCDS DB by GeneID:74189See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108917.7 ENSMUSP00000104545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108917.7Link to Ensembl Protein Viewer:ENSMUSP00000104545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108917Re-query CCDS DB by Protein ID:ENSMUSP00000104545
Original member Current member NCBI NM_001177790.1 NP_001171261.1 Accepted alive Link to Nucleotide Sequence:NM_001177790.1Link to Protein Sequence:NP_001171261.1Re-query CCDS DB by Nucleotide ID:NM_001177790Re-query CCDS DB by Protein ID:NP_001171261Link to BLAST:NP_001171261.1

Chromosomal Locations for CCDS 50838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178119200 178119302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178256113 178256274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178260178 178260255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178269317 178269499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178278897 178279106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178283010 178283184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178283860 178284107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178302685 178302838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178328141 178328193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178331580 178331641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178332822 178332962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178334051 178334127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178335506 178335521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCGTGGCCAAGGCAGGGGGCACGCCCGCTGGCCCGCGCCTCTGCGCTCACTGCTGCGTGCCTTTGGGC
CCCAAGACACCACCACCGGAGGCTTGGAGCAAGATGAGATGGACCAAACTCCCCCAGCACGCTCAGAGCC
TCTGGTCTCAGGGATTCGAACTCCCCCTGTGAGGAGGAACAGCAAGCTGGCCACCCTGGGCAGGATCTTC
AAACCTTGGAAATGGAGGAAAAAGAAAAACGAGAAACTGAAGCAGACGACGTCAGCGCTGGAGAAGAAGA
TGGCTGGCAGGCAAGGCCGGGAGGAACTCATCAAGCAGGGACTGCTGGAGATGATGGAGCAAGATTCTGA
AAATAAGGCATGCAGTCCCAAGGAAGGCTCCCAACCTGTGCAGAGTGAGCCGCCCGCTGGCGAGCAGGAG
ACGCTGACCTCGGAGGGCGCCCAGCCCGGAAGCCCCTCGGCCAGTGGAACAGATCAGGTGTCCCAGGATG
AGCTTCTGTCCTCCGATGCTCATCTGGATGATACAGCCAATATACCGTCTGCATCCACTGCGGAAGAAGC
AGACGCTGGCAGCCTCCTGCCCACCACTGATGAGCCCTCTCAAGCCTTAGCTGGGTCTGACTCCCTGGAC
AGTCCTCCCAGATCCCTGGAGAGATCTGTGAGCCAGCTCCCCAGCCCTCCACTGCTGCCCACCCCGCCAC
CCAAGGCCAGCTCTAAAGCCACAAAAAATGTCACAGGACAAGCTGCGCTCTTCCAAGGCCCCAGCATGAA
GAACAATGAGCCGGCTCTCAGAGGACAGCTTGCCACCCCCACAGGGTCCCCTCATGTCACCACTGTCCAC
CGGCCACTGCCCCCCAGCCGCGTGATGGAGGAGCTGCATAGGGCACTGGCTACAAAGCACCGTCAGGACA
GTTTTCAAGGGCGGGAATGCAGAGGGTCTCCAAAGAAGCGGATGGATGTGCGTCTGTCTAGGACGTCCAG
CATGGAGCGGGGCAAGGAGAGGGACGAGGCGTGGAGCTTTGACGGGGCCTCAGAGAACAAGTGGACGGCT
ACCAAAGACTCCGAGGAGAACAAGGAGAATCTGATGCTGAGCTCCGAGCTCAAGGATGACATGCTCCTGT
ATCAGGACGAGGAGGCGCTCAATGACTCCATCATCTCGGGAACTTTGCCGAGGAAATGCAAGAAGGAGTT
GCTGGCAGTGAAGCTGAGGAACCGGCCGAGCAAGCAGGAGCTAGAGGACCGGAACATCTTCCCCAGGAGG
ACCGATGAGGAGAGACAGGAGATCCGACAGCAGATAGAGATGAAGCTGTCCAAGCTGAGCCAGAGACCCG
CCGTGGAGGAACTGGAGAGAAGAAATATCCTGAAACAAAGGAATGATCAGACAGAGCAGGAAGAAAGGAG
AGAAATCAAGCAAAGATTAACAAGAAAGCTTAACCAGAGACCCACTGTTGATGAATTGAGAGACAGAAAA
ATTCTGATCCGTTTCAGTGATTATGTGGAAGTAGCAAGAGCACAGGACTATGACAGGAGGGCAGACAAGC
CCTGGACAAGACTGTCAGCAGCAGATAAGGCAGCAATTCGTAAAGAATTAAATGAATATAAAAGTAACGA
AATGGAGGTACACGCATCCAGCAAGCACTTGACAAGATTCCACAGGCCATAG

Translation (553 aa):
MRGQGRGHARWPAPLRSLLRAFGPQDTTTGGLEQDEMDQTPPARSEPLVSGIRTPPVRRNSKLATLGRIF
KPWKWRKKKNEKLKQTTSALEKKMAGRQGREELIKQGLLEMMEQDSENKACSPKEGSQPVQSEPPAGEQE
TLTSEGAQPGSPSASGTDQVSQDELLSSDAHLDDTANIPSASTAEEADAGSLLPTTDEPSQALAGSDSLD
SPPRSLERSVSQLPSPPLLPTPPPKASSKATKNVTGQAALFQGPSMKNNEPALRGQLATPTGSPHVTTVH
RPLPPSRVMEELHRALATKHRQDSFQGRECRGSPKKRMDVRLSRTSSMERGKERDEAWSFDGASENKWTA
TKDSEENKENLMLSSELKDDMLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRR
TDEERQEIRQQIEMKLSKLSQRPAVEELERRNILKQRNDQTEQEERREIKQRLTRKLNQRPTVDELRDRK
ILIRFSDYVEVARAQDYDRRADKPWTRLSAADKAAIRKELNEYKSNEMEVHASSKHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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