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Report for CCDS50652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50652.1 Public Mus musculus 2 Lmo2 23 108 98 CCDS HistoryNCBI Gene:16909Re-query CCDS DB by CCDS ID:50652.1Re-query CCDS DB by GeneID:16909See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170926.7 ENSMUSP00000128317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170926.7Link to Ensembl Protein Viewer:ENSMUSP00000128317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170926Re-query CCDS DB by Protein ID:ENSMUSP00000128317
Original member Current member NCBI NM_001142336.1 NP_001135808.1 Accepted alive Link to Nucleotide Sequence:NM_001142336.1Link to Protein Sequence:NP_001135808.1Re-query CCDS DB by Nucleotide ID:NM_001142336Re-query CCDS DB by Protein ID:NP_001135808Link to BLAST:NP_001135808.1
Original member NCBI NM_001142337.1 NP_001135809.1 Updated not alive Link to Nucleotide Sequence:NM_001142337.1Link to Protein Sequence:NP_001135809.1Re-query CCDS DB by Nucleotide ID:NM_001142337Re-query CCDS DB by Protein ID:NP_001135809
Current member NCBI NM_001142337.2 NP_001135809.1 Accepted alive Link to Nucleotide Sequence:NM_001142337.2Link to Protein Sequence:NP_001135809.1Re-query CCDS DB by Nucleotide ID:NM_001142337Re-query CCDS DB by Protein ID:NP_001135809Link to BLAST:NP_001135809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135808.1 158 P25801 158 100% 0 0
NP_001135809.1 158 P25801 158 100% 0 0

Chromosomal Locations for CCDS 50652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103970672 103970712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103976005 103976220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103980875 103981094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGAGGAACCCGTGGATGAGGTGCTGCAGATAC
CCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGA
CCAGTACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGGAGGCGC
CTCTACTACAAGCTGGGACGGAAATTGTGCAGGAGAGACTATCTCAGGCTTTTTGGTCAGGATGGTCTCT
GTGCATCCTGTGACAAGCGGATCCGTGCCTATGAGATGACGATGCGGGTGAAAGACAAAGTGTATCACCT
GGAGTGTTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGTAGGTGACAGATACCTTCTCATCAACTCC
GACATAGTGTGTGAACAAGACATCTACGAGTGGACCAAGATCAATGGGATCATCTAG

Translation (158 aa):
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRR
LYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS
DIVCEQDIYEWTKINGII


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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