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Report for CCDS50651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50651.1 Public Mus musculus 2 Lmo2 23 108 98 CCDS HistoryNCBI Gene:16909Re-query CCDS DB by CCDS ID:50651.1Re-query CCDS DB by GeneID:16909See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111143.7 ENSMUSP00000106773.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111143.7Link to Ensembl Protein Viewer:ENSMUSP00000106773.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111143Re-query CCDS DB by Protein ID:ENSMUSP00000106773
Original member NCBI NM_001142335.1 NP_001135807.1 Updated not alive Link to Nucleotide Sequence:NM_001142335.1Link to Protein Sequence:NP_001135807.1Re-query CCDS DB by Nucleotide ID:NM_001142335Re-query CCDS DB by Protein ID:NP_001135807
Current member NCBI NM_001142335.2 NP_001135807.1 Accepted alive Link to Nucleotide Sequence:NM_001142335.2Link to Protein Sequence:NP_001135807.1Re-query CCDS DB by Nucleotide ID:NM_001142335Re-query CCDS DB by Protein ID:NP_001135807Link to BLAST:NP_001135807.1

Chromosomal Locations for CCDS 50651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103970359 103970365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103970493 103970712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103976005 103976220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103980875 103981094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGAAGGGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGA
GGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGC
CACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAG
AGCCTGGACCCGTCTGAGGAACCCGTGGATGAGGTGCTGCAGATACCCCCATCCCTGCTGACATGTGGTG
GCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGCATGAGGATTGCCT
CAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGGAGGCGCCTCTACTACAAGCTGGGACGGAAA
TTGTGCAGGAGAGACTATCTCAGGCTTTTTGGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGGATCC
GTGCCTATGAGATGACGATGCGGGTGAAAGACAAAGTGTATCACCTGGAGTGTTTCAAATGCGCCGCCTG
TCAGAAGCATTTCTGTGTAGGTGACAGATACCTTCTCATCAACTCCGACATAGTGTGTGAACAAGACATC
TACGAGTGGACCAAGATCAATGGGATCATCTAG

Translation (220 aa):
MEGSAVTVLERGGASSPAERPSKRRRRSGGARAPEGVRVQAASQPRATKGAPPPPGTPPPSPMSSAIERK
SLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRK
LCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI
YEWTKINGII


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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