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Report for CCDS50452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50452.1 Public Mus musculus 19 Fgf8 23 108 98 CCDS HistoryNCBI Gene:14179Re-query CCDS DB by CCDS ID:50452.1Re-query CCDS DB by GeneID:14179See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026240.13 ENSMUSP00000026240.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026240.13Link to Ensembl Protein Viewer:ENSMUSP00000026240.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026240Re-query CCDS DB by Protein ID:ENSMUSP00000026240
Original member NCBI NM_001166361.1 NP_001159833.1 Updated not alive Link to Nucleotide Sequence:NM_001166361.1Link to Protein Sequence:NP_001159833.1Re-query CCDS DB by Nucleotide ID:NM_001166361Re-query CCDS DB by Protein ID:NP_001159833
Current member NCBI NM_001166361.2 NP_001159833.1 Accepted alive Link to Nucleotide Sequence:NM_001166361.2Link to Protein Sequence:NP_001159833.1Re-query CCDS DB by Nucleotide ID:NM_001166361Re-query CCDS DB by Protein ID:NP_001159833Link to BLAST:NP_001159833.1

Chromosomal Locations for CCDS 50452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45736990 45737280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45738118 45738224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45741499 45741679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45741911 45741997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45742516 45742552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45742653 45742684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGGCAGCCCCCGCTCCGCGCTGAGCTGCCTGCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAGG
AAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCA
GGGTGTTTCCCAACAGGTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTG
GTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACG
TGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCGCGAAGCTCATTGT
GGAGACCGATACTTTTGGAAGCAGAGTCCGAGTTCGCGGCGCAGAGACAGGTCTCTACATCTGCATGAAC
AAGAAGGGGAAGCTAATTGCCAAGAGCAACGGCAAAGGCAAGGACTGCGTATTCACAGAGATCGTGCTGG
AGAACAACTACACGGCGCTGCAGAACGCCAAGTACGAGGGCTGGTACATGGCCTTTACCCGCAAGGGCCG
GCCCCGCAAGGGCTCCAAGACGCGCCAGCATCAGCGCGAGGTGCACTTCATGAAGCGCCTGCCGCGGGGC
CACCACACCACCGAGCAGAGCCTGCGCTTCGAGTTCCTCAACTACCCGCCCTTCACGCGCAGCCTGCGCG
GCAGCCAGAGGACTTGGGCCCCGGAGCCCCGATAG

Translation (244 aa):
MGSPRSALSCLLLHLLVLCLQAQEGPGGGPALGREPTSLLRAGREPQGVSQQVTVQSSPNFTQHVREQSL
VTDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMN
KKGKLIAKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRG
HHTTEQSLRFEFLNYPPFTRSLRGSQRTWAPEPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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