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Report for CCDS50379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50379.1 Public Mus musculus 19 Atl3 23 108 98 CCDS HistoryNCBI Gene:109168Re-query CCDS DB by CCDS ID:50379.1Re-query CCDS DB by GeneID:109168See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170373.8 ENSMUSP00000132619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170373.8Link to Ensembl Protein Viewer:ENSMUSP00000132619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170373Re-query CCDS DB by Protein ID:ENSMUSP00000132619
Original member Current member NCBI NM_001163505.1 NP_001156977.1 Accepted alive Link to Nucleotide Sequence:NM_001163505.1Link to Protein Sequence:NP_001156977.1Re-query CCDS DB by Nucleotide ID:NM_001163505Re-query CCDS DB by Protein ID:NP_001156977Link to BLAST:NP_001156977.1

Chromosomal Locations for CCDS 50379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7494331 7494361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7509348 7509562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7509983 7510126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7516878 7516982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7518546 7518596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7520787 7520843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7521110 7521202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7522069 7522207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7528942 7529069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7529608 7529664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7530520 7530591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7532016 7532447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7533950 7534036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGACCCGACATTCCAGTACGCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGG
TTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCA
AGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTC
ATTCTGGACTTTATGCTGCGATACTTATATTCTCAGAAGGAAGGTGGTCATTCAGACTGGTTGGGTGACC
CAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTG
GAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAGGTTGCAGTTGTTCTGATGGATACCCAGGGG
GCCTTTGACAGCCAGTCAACTGTGAAGGATTGTGCTACCATTTTTGCTCTAAGCACTATGACTAGTTCTG
TTCAGATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAGCTCTTCACAGAATA
TGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAGACACTGATGTTTTTGATTCGAGATTGG
AGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACATGTGA
AGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTG
TTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAGATATT
GCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGA
AGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAGGCATATATTAAAATTTA
CCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAGGCCACTGCTGAAGCCAATAATTTGGCAGCT
GCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAGATTTGTGGGGGAGAGAAACCTTATTTGT
CTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCTCTGGACCACTTTAAGAAGATCAA
AAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTAT
GAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCA
CAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCT
GTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAG
TATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAGGCTTCTTCGCATATTG
GTAATTCTACTCAGGCTGCAGTAAGGGATGCCGTTGTTGGGAGACCACCTGCTGATAAAAAATCTCAATA
G

Translation (536 aa):
MDPTFQYAVTGDAMENGKPGPVQVVLVHKEQHSFELEERALASVLLQDHIRDLDVVVVSVAGAFRKGKSF
ILDFMLRYLYSQKEGGHSDWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVKKPCGKKVAVVLMDTQG
AFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLIRDW
SFPYEYNYGLQGGMAFLDKRLHVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPNFDGKLKDI
ASEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAA
AASAKDIYYNNMEEICGGEKPYLSPDILEEKHLEFKQLALDHFKKIKKMGGKDFSFRYQQELEEEIKELY
ENFCKHNGSKNVFSTFRTPAVLFTGIAALYIASGFTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQ
YRELGGAIDSGAAYVLEQASSHIGNSTQAAVRDAVVGRPPADKKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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