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Report for CCDS50340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50340.1 Public Mus musculus 19 Ppp6r3 23 108 98 CCDS HistoryNCBI Gene:52036Re-query CCDS DB by CCDS ID:50340.1Re-query CCDS DB by GeneID:52036See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172362.2 ENSMUSP00000131084.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172362.2Link to Ensembl Protein Viewer:ENSMUSP00000131084.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172362Re-query CCDS DB by Protein ID:ENSMUSP00000131084
Original member Current member NCBI NM_001164159.1 NP_001157631.1 Accepted alive Link to Nucleotide Sequence:NM_001164159.1Link to Protein Sequence:NP_001157631.1Re-query CCDS DB by Nucleotide ID:NM_001164159Re-query CCDS DB by Protein ID:NP_001157631Link to BLAST:NP_001157631.1
Original member Current member NCBI NM_001360430.1 NP_001347359.1 Accepted alive Link to Nucleotide Sequence:NM_001360430.1Link to Protein Sequence:NP_001347359.1Re-query CCDS DB by Nucleotide ID:NM_001360430Re-query CCDS DB by Protein ID:NP_001347359Link to BLAST:NP_001347359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157631.1 827 Q922D4-2 827 100% 0 0
NP_001347359.1 827 Q922D4-2 827 100% 0 0

Chromosomal Locations for CCDS 50340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3457000 3457051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3459361 3459480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3464545 3464695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3466493 3466599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3467141 3467294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3469641 3469762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3470971 3471101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3471979 3472033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3473769 3473815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3484831 3484916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3486976 3487091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3490774 3490838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3492366 3492515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3493886 3494038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3496522 3496651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3507242 3507355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3511929 3512041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3514654 3514719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3518245 3518382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3521734 3521920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3526702 3526928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCTAGAGAGAGAAGATGTGACAC
TGAAGGAGCTAATGGATGAGGAGGATGTTCTACAGGAGTGTAAAGCACAGAACCGCAAGCTCATAGAATT
TCTGTTAAAAGCAGAATGTCTGGAAGATTTAGTCTCATTCATTATAGAAGAACCACCTCAAGATATGGAT
GAGAAGATCCGATACAAGTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATG
ATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAA
CCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGATTGTG
GATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGG
ATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATTGGCTAAA
TGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGATCGGCATTCAAAT
GCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAG
AGCCAGACCCCCTGCTTGCCACTCTAGAAAAGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCA
CAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGG
CCAACGTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGA
GTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAGAAAAG
TGTGATGAAGACTACATGGGGTATATTGGACCCACCTGTGGGGAATACTCGATTAAATGTCATTAGGTTG
ATATCCAGCCTGCTCCAAACCAATACCAGCAGCATAAATGGAGACCTGATGGAACTGAACAGCATTGGCG
TCATATTGGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGC
TCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAGAATGGCACAATTACTGATCAAGACTCCACTGGTGAC
AATTTGTTATTGAAGCATCTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAA
ATGAGAAGAAACAGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTG
TATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAGATCTTCCCGAT
GAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAG
ATCTATTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAATGTTTCTTTTGATCGGGT
GTCAGATATCAACTTTACTCTCAATACAAATGAAAGTGGAAATATTGCCCTGTTTGAAGCATGTTGTAAA
GAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCAT
TTACTCCCGAATCCCAGAGGAGGTCCAGCTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGA
AGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGAT
CTGAATGAGCCACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAG
ACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTT
TTCAGAGTTCACATCCTCCCTGAGCACAAAGGAGTCTTTAAGGAGTAATTCGCCTGTGGAAATGGAAACC
AGCACTGAATCCGTGGACCCCTTGACACCTGGTGCAGCTGCCTTGGCCACTCAGCCAGAGGCACCAGGCA
GTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGT
GATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAA
AGTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAG
CAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAGGACCGACCAGCCAAGCAT
GCCAAGCGACCCATCAGTTAATGGCCCTGTATGA

Translation (827 aa):
MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMD
EKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIV
DFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSN
ASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRR
PTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRL
ISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSTGD
NLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPD
EVRERWETFCTNSLGETNKRNTVDLFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCK
ERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVD
LNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSSLSTKESLRSNSPVEMET
STESVDPLTPGAAALATQPEAPGSMAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFK
SEEEKLSTSQDAACKDAEETPEPAEAKCTAPLTPSSSPEQRTDQPSMPSDPSVNGPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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