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Report for CCDS50207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50207.1 Public Mus musculus 17 Ston1 23 108 98 CCDS HistoryNCBI Gene:77057Re-query CCDS DB by CCDS ID:50207.1Re-query CCDS DB by GeneID:77057See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064035.12 ENSMUSP00000067027.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064035.12Link to Ensembl Protein Viewer:ENSMUSP00000067027.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064035Re-query CCDS DB by Protein ID:ENSMUSP00000067027
Original member Current member EBI ENSMUST00000150023.1 ENSMUSP00000122928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150023.1Link to Ensembl Protein Viewer:ENSMUSP00000122928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150023Re-query CCDS DB by Protein ID:ENSMUSP00000122928
Original member Current member EBI ENSMUST00000163588.7 ENSMUSP00000131703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163588.7Link to Ensembl Protein Viewer:ENSMUSP00000131703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163588Re-query CCDS DB by Protein ID:ENSMUSP00000131703
Original member Current member NCBI NM_029858.2 NP_084134.2 Accepted alive Link to Nucleotide Sequence:NM_029858.2Link to Protein Sequence:NP_084134.2Re-query CCDS DB by Nucleotide ID:NM_029858Re-query CCDS DB by Protein ID:NP_084134Link to BLAST:NP_084134.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084134.2 730 Q8CDJ8 730 100% 0 0

Chromosomal Locations for CCDS 50207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 88635168 88637082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88644338 88644540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88645215 88645289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGTATTCTACAAACCCGGGCAGCTGGGTCACCTTTGATGATGACCCTGCTTTTCAATCTTCTCAGAAAA
GAAAGGATTTTTCTCTGGAGACTCAGGGTGTTTGTAGACCAAACGGACTGAAGCTGACCCTTCCTACCCT
CCGGGACCCTCCCAGCACCCCCTCCTCTGCCAGCAGCACCCCCCTGTCCTCTCCCATGGTGGATTTTTAT
TTCAGTCCAGGACCCCCAAGCAACTCCCCTCTTTCTACACCCACCAAAGACTTCCCAGGGTTCCCTGGCA
TCCCTAAAGCAGGGACACATGTGCTTTATCCTATTCCAGAGTGTTCTTCAAGCAGTGCCCCCACAACGGC
GGGAGGAGTGGGTCCCCCATTATTACTTACTAAGCCAGACTGCTCCCCCCATGTATCGTTACCCAGTAGC
CACTCCCACACTCAGCCCACTCCAACACTCGGTTTTACAGAAGACGCTGGCCCTCAGCGGGTCCAAAGCG
AGGCTCGGCAGTTCGAATATTTTCAGGACCATTGTGCTTTCTCCAACCCATTTTGGAAAGATGAAGGTAG
CGCTTCCCCGTTCCCCCTTGACTCCCTGGCAAGCAGAAAGCCGTTCTCACCAAAGGACAAGGAGGTACCT
ATTGGCCACAAAAGCCTAACCCAGTGCTCACTGGACTACATCTGCGAGAAGCTGGAACACTTGCACTCAG
CGGAGACCCAAGACCCTCTTGGAGATTTGTCTATGCAGGATCCATATGCAGGAGACACAGTCTCGTTTGT
CCCACACTCCCTCTTCCGGAGTCAGCCCAGAGCTGGATGGTCCTTCATGCTGAGGATTCCCGAGAAGAAG
AACATGATGTCTTCCCGGCAATGGGGACCCATTTTCCTAAAGGTTCTTCCTGGAGGGATTCTGCAGATGT
ACTATGAGAAGGGGCTAGAAAAACCATTCAAAGAGTTCCAGCTTGACCCACATTGCAGGCTTTCTGAGCC
CAAACTCGAGAACTTCAGCATGGCAGGGAAAATCCACACCGTGAAGGTGGAACACGTGTCTTACTCAGAG
AAAAGGAAATACCATGCCAAGACAGAGGTGGTTCACGAGCCGGAAGTGGAGCAGATGCTGAAGCTGGGGT
CCACGGAACACCGTGACTTCCTCGAGTTTCTGACTACCGTCGAAGAGGAGCTAATAAAGCTGCCGGCTAC
TGCCAAGCCCAAGAACAAAAGCTACGAGGAACAAGAAATTTGCCTGGACATTCAGGACAGCCTTTGGGGT
AAAGTAACCAAAGAGGGGCAGCTGGTGGAAAGCGCCGTGGTAACTCAGATCTGCTGCCTCTGCTTTCTCA
ACGGGCCCGCGGAATGTTTCTTAGCCTTAAACGACCGTGAGCTCCAGAAACGGGACGAATGCTATTTTGA
GAAAGAACCGGAAAAAAAGGGGATTGCTATTCTTGACTACCATTTCCATACGTGTGTGAAGGCTGAAGAA
TTTGAACAGTCCAGAATCATTAAGTTCGTGCCTCTGGATGCTTGCCGGTTTGAGCTGATGCGTTTCAAAA
CCTCGTACGAAGCGGGTGAGCTCCCCTTTGCGGTGAAGTCCGTAGTAACTGTCCAGGGAGCCTATGTGGA
GCTGCAGGCCTTTGTCAACATGACCCCAGCAGCTCAGGGGTCACCCCATGCCGGTGCCCTGAGGAGCTGT
AACAATATCATGATTCATTTTCCTGTCCCAGCCCAGTGGATCAAGGCCCTCTGGACCAGGAACCTTCAGA
GGCAGAAGTCCCTGAAAGCCAAAATGAACCGTCGGGCTTGTCTGGGGAGTTTACAGGAGCCTGAATCTGA
ACCTGTCATTCAGGTCACTGTCGGGTCAGCAAAATATGAGAGCGCCTACCGGGCTGTGGTGTGGAAGATA
GACCGGCTTCCGGATAAAAACTCAAGTCCTGATCAGCCCCATTGTCTGTCATACAAACTAGAACTTGGGT
CAGACCAGGAAGTTCCCTCAGATTGGTATCCATTTGCTACTGTCCAGTTTTCCATGCTTGAAGCCTGTGC
CTCAAGGACAGAGGTGAGGTCTCTGGGAGTGGAGAGCGATGCCCAGCCTCAGAAGCACGTGTGTCAGCGA
GCTTGCTACAACATCCAGGTTGAAATAGAAAAGAAGTGGATTCAAGTAGATGGAGAAGACGCAGATAAAA
CTGGTGGCTGTGTAACTCAATAA

Translation (730 aa):
MYSTNPGSWVTFDDDPAFQSSQKRKDFSLETQGVCRPNGLKLTLPTLRDPPSTPSSASSTPLSSPMVDFY
FSPGPPSNSPLSTPTKDFPGFPGIPKAGTHVLYPIPECSSSSAPTTAGGVGPPLLLTKPDCSPHVSLPSS
HSHTQPTPTLGFTEDAGPQRVQSEARQFEYFQDHCAFSNPFWKDEGSASPFPLDSLASRKPFSPKDKEVP
IGHKSLTQCSLDYICEKLEHLHSAETQDPLGDLSMQDPYAGDTVSFVPHSLFRSQPRAGWSFMLRIPEKK
NMMSSRQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLDPHCRLSEPKLENFSMAGKIHTVKVEHVSYSE
KRKYHAKTEVVHEPEVEQMLKLGSTEHRDFLEFLTTVEEELIKLPATAKPKNKSYEEQEICLDIQDSLWG
KVTKEGQLVESAVVTQICCLCFLNGPAECFLALNDRELQKRDECYFEKEPEKKGIAILDYHFHTCVKAEE
FEQSRIIKFVPLDACRFELMRFKTSYEAGELPFAVKSVVTVQGAYVELQAFVNMTPAAQGSPHAGALRSC
NNIMIHFPVPAQWIKALWTRNLQRQKSLKAKMNRRACLGSLQEPESEPVIQVTVGSAKYESAYRAVVWKI
DRLPDKNSSPDQPHCLSYKLELGSDQEVPSDWYPFATVQFSMLEACASRTEVRSLGVESDAQPQKHVCQR
ACYNIQVEIEKKWIQVDGEDADKTGGCVTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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