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Report for CCDS50189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50189.1 Public Mus musculus 17 Arhgef33 23 108 98 CCDS HistoryNCBI Gene:381112Re-query CCDS DB by CCDS ID:50189.1Re-query CCDS DB by GeneID:381112See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068175.5 ENSMUSP00000063284.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068175.5Link to Ensembl Protein Viewer:ENSMUSP00000063284.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068175Re-query CCDS DB by Protein ID:ENSMUSP00000063284
Original member Current member EBI ENSMUST00000223878.1 ENSMUSP00000153224.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223878.1Link to Ensembl Protein Viewer:ENSMUSP00000153224.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223878Re-query CCDS DB by Protein ID:ENSMUSP00000153224
Original member Current member NCBI NM_001145452.1 NP_001138924.1 Accepted alive Link to Nucleotide Sequence:NM_001145452.1Link to Protein Sequence:NP_001138924.1Re-query CCDS DB by Nucleotide ID:NM_001145452Re-query CCDS DB by Protein ID:NP_001138924Link to BLAST:NP_001138924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138924.1 850 Q8BW86-1 850 100% 0 0

Chromosomal Locations for CCDS 50189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80335318 80335342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80337269 80337318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80347121 80347285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80347608 80347729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80349420 80349586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80352680 80352739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80354979 80355203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80360322 80360451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80365269 80365401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80367253 80367336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80368185 80368268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80370271 80370419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80371271 80371435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80372992 80373793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80381338 80381477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80386367 80386418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2553 nt):
ATGGAAAAATCCAAAGCCAAGCAAGGAGAGAATGAACACATGCCGGTGAATAACCCTTCCACACAGATTT
ACCAGCTGCAGGCCCTGGCCTCGGAACTGAAAACGGGCTTCACAGAAGCAATGCAGGAGCTGACACGGAT
CCAACATGGAGAATACGCTTTGGAAGAGAAGGTCAAGAGCTGCCGATGTTCAATGGAAGAGAAAGTCACG
GAGATGAAGAATTCATTAAACTACTTCAAGGAAGAGCTGAGCAATGCAATGTCCATGATTCAGGCCATCA
CTTCCAAGCAAGAAGAAATGCAGCAGAAAATCGAACAGCTGCAGCAGGAGAAGAGAAGAGAATCTCGAAA
GGTCAAAGCCAAGAAAGCCCAAAAGGAAGAACATGGCGCGCAGGCCGGGCCGGCATCTGCGCCTGCGCCT
GGGTCTGCGCCGACTCAAGGAAGCCCCTTCCGCTCCATCAATGTCCCTGAAGCCGGTCTCCCCAGTGACG
ACTTCACCAACATGTTGCCTTCTCAGAACTATGAAAAAGCCCAAGAGTCAAGATCTGTTCATGTAGGAGA
TAGCAATGTCAAGGGGATGATGGGTCCTGGAGTGAACCCAACAACTCCAGAATCCGATGAAAACCTTAAG
CCTTCTCTCTCAGCCGAGATCCAGTCCAAGGGCCATCACACACCTGGCCTGTGGAGACAGCCTAAGGAAG
GCAAAGAATGGGGCGAGGAATATGTCACAAAAGACCACCCAGATAAGCTGAAGGACGCTGGCCAGGGCAG
ACACAGCTCCCTGGAAAACGTTCTGTGTGAAACCTCTTTAGCTGCAAAAAGGCAAACTGTGGCTCTGGAA
CTGCTTGAATCAGAACGGAAGTACGTCATCAACATCTCGCTGATCCTGAAGATAAAGGCCACCTTCCAGG
GCTCCGATGGAAAGAGGAACCCCAAGGAGAGAAGCCTCTTCCCTGGCTCCTTGCGCTACCTCGTCCAGCA
GCACTTGGACTTGCTTCACGCGCTGCAGGAGAGGGTCCTGAAGTGGCCACGCCAAGGAGTCCTTGGAGAC
TTATTCCTGAAGTTGACAAATGATGAGAATAATTTCTTGGATTATTATGTCGCCTACCTGAGGGATTTAC
CCGAATGCATCTCATTGGTTCATGTTGTGGTACTGAAGGAGGGTGATGAAGAGATTAAGTCGGATATCTA
CACTCTGTTTTTCCACATAGTACAGCGTATCCCCGAATATCTGATACATCTGCAGAATGTTCTGAAGTTC
ACAGAGCAGGAGCACCCAGACTATTACCTCCTACTTGTGTGTGTTCAGCGCCTCCGAGTGTTTATCTCTC
ATTATACCCTGCTGTTTCAATGCAATGAAGATTTGCTTATTCAGAAACGGAAAAAACTCAAAAAGTCATC
TATGGCAAAGCTGTACAAAGGGCTGGCTTCCCAGTGTGCCAATGCTGGCCAAGATGCTTCCCCCAATGCA
GGCCAGGAGGCTGTCCACGACAGTGGGGTCCACTCAGAAGAAATGCTCCAACCCTATCCTTCCTCTTCCA
GTTCCGCCCCTGCTGTCTCACATCTGATGGCCCCGGCAAAGAAAGGCCAGCAGCAGCAGAGCCTCATGGA
GAGCATGCAGCCCGGGAAGCCTGGAGACTGGGAGCTGGAGGGCAGGAAGCACGAGCGGCCCGAGAGCCTG
CTGGCGCCGGCTCAGTTCTGCGCGGCCGAGCAGGACGTGAAGGCGCTCGCCGGGCCTCTGCAGGCCATCC
CGGAGATGGACTTCGAGCCGTCTTCCGCCGAGCCGCTAGGCAACGTGGAGCGCTCGCTGCGCGGTCCGCC
CGAGCTCCTGCCCGACGCGCGCGGCTTCGTGCCCGCCGGCTACGAGGAGTTCGAGTACGGCGGCGAGATC
TTCGCGCTGCCCGCGCCCTACGACGAGGAGCCCTTCCAGGCGCCGGCGCTCTTCGACAACTGCTCGCCTG
CCTCCTCCGAGTCCAGCCTGGACATCTGCTTCCTGCGGCCCGTCAGCTTCGCCATGGAGGCCGAGAGGCC
GGAGCACGCGCTGCAGCCGCTGCCCAAGAGCGCCACGTCGCCGGCGAGCAGCAGCGGCGCCTACAAGCTG
GAGGCCGCGCAGGCGCAGGCGCACGGCAAGGCCAAGCCTCTGAGCCGCTCGCTCAAGGAGTTCCCGCGCA
CGCCGCCCGCCGAGGGCGTGGCCCCGCGCCTCTACAGCACGCGAAGCAGCAGCGGCGGCCGCGCGCCGCT
CAAGGTCGAGCGCGCTCCCGCCCCGCACGGCCCCGCCGCCGCCGCTGCCGCCTCCCGCGGGGCGCCGCGG
ACCTTCTTCCCCCAACAGAGGTCCCAAAGCGAAAAACAGACCTATTTGGAAGAGATGCACCTAGAGGATG
CCACTCGATTCTGTCCAAAGGAAGAAAGAGAGAGTGAACAGACTTCTTTCAGCGATCAAAATCCCAGGCA
AGACCAGAAAGGGGGCTTTCGCAGCTCATTCCGCAAGCTCTTTAAAAAGAAAAATGGGAACTCAACTGGT
GAAGATTTCTGTGGTCCTTGGGGCTGGTGGTGA

Translation (850 aa):
MEKSKAKQGENEHMPVNNPSTQIYQLQALASELKTGFTEAMQELTRIQHGEYALEEKVKSCRCSMEEKVT
EMKNSLNYFKEELSNAMSMIQAITSKQEEMQQKIEQLQQEKRRESRKVKAKKAQKEEHGAQAGPASAPAP
GSAPTQGSPFRSINVPEAGLPSDDFTNMLPSQNYEKAQESRSVHVGDSNVKGMMGPGVNPTTPESDENLK
PSLSAEIQSKGHHTPGLWRQPKEGKEWGEEYVTKDHPDKLKDAGQGRHSSLENVLCETSLAAKRQTVALE
LLESERKYVINISLILKIKATFQGSDGKRNPKERSLFPGSLRYLVQQHLDLLHALQERVLKWPRQGVLGD
LFLKLTNDENNFLDYYVAYLRDLPECISLVHVVVLKEGDEEIKSDIYTLFFHIVQRIPEYLIHLQNVLKF
TEQEHPDYYLLLVCVQRLRVFISHYTLLFQCNEDLLIQKRKKLKKSSMAKLYKGLASQCANAGQDASPNA
GQEAVHDSGVHSEEMLQPYPSSSSSAPAVSHLMAPAKKGQQQQSLMESMQPGKPGDWELEGRKHERPESL
LAPAQFCAAEQDVKALAGPLQAIPEMDFEPSSAEPLGNVERSLRGPPELLPDARGFVPAGYEEFEYGGEI
FALPAPYDEEPFQAPALFDNCSPASSESSLDICFLRPVSFAMEAERPEHALQPLPKSATSPASSSGAYKL
EAAQAQAHGKAKPLSRSLKEFPRTPPAEGVAPRLYSTRSSSGGRAPLKVERAPAPHGPAAAAAASRGAPR
TFFPQQRSQSEKQTYLEEMHLEDATRFCPKEERESEQTSFSDQNPRQDQKGGFRSSFRKLFKKKNGNSTG
EDFCGPWGWW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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