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Report for CCDS49238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49238.1 Public Mus musculus 13 Rreb1 23 108 98 CCDS HistoryNCBI Gene:68750Re-query CCDS DB by CCDS ID:49238.1Re-query CCDS DB by GeneID:68750See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037232.7 ENSMUSP00000049265.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037232.7Link to Ensembl Protein Viewer:ENSMUSP00000049265.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037232Re-query CCDS DB by Protein ID:ENSMUSP00000049265
Original member Current member EBI ENSMUST00000128570.8 ENSMUSP00000115599.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128570.8Link to Ensembl Protein Viewer:ENSMUSP00000115599.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128570Re-query CCDS DB by Protein ID:ENSMUSP00000115599
Original member NCBI NM_001177869.1 NP_001171340.1 Updated not alive Link to Nucleotide Sequence:NM_001177869.1Link to Protein Sequence:NP_001171340.1Re-query CCDS DB by Nucleotide ID:NM_001177869Re-query CCDS DB by Protein ID:NP_001171340
Current member NCBI NM_001177869.2 NP_001171340.1 Accepted alive Link to Nucleotide Sequence:NM_001177869.2Link to Protein Sequence:NP_001171340.1Re-query CCDS DB by Nucleotide ID:NM_001177869Re-query CCDS DB by Protein ID:NP_001171340Link to BLAST:NP_001171340.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171340.1 1754 Q3UH06-3 1754 100% 0 0

Chromosomal Locations for CCDS 49238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 37893814 37893984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37898412 37898501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37899624 37899787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37916022 37916160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37916459 37916595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37928123 37928312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37929558 37932489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37941543 37941704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37946857 37947663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37948643 37949115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5265 nt):
ATGACGTCGAATTCGCCCATTGGTTTAGAAGGCTCAGACCTGTCTTCCATCAACACCATGATGTCAGCAG
TAATGAGCGTAGCGAGTGTCACAGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAACCTCC
AGGACCAAATCGGATTGGCAGAAGGAACCAGGAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTA
TGTGAAAAGATTTGCACCACCCAGCACCAGCTGACCATGCACATCCGTCAGCACAACACAGACACGGGAG
GAGCTGACCACGCATGCAGTATCTGTGGGAAGTCGCTGAGCTCGGCCAGCTCCCTGGATCGTCACATGCT
GGTGCACTCTGGCGAGAGGCCTTACAAGTGTACAGTGTGTGGCCAGTCTTTCACCACCAATGGGAACATG
CACAGACATATGAAGATTCATGAGAAGGATACCAACAGTACTACAGCTGCAGCCCCTCCATCCCCTCTGA
AGCGCAGGCGGTTGTCCTCCAAAAGGAAGCTGAGTCACGATGCCGAGTCAGAAGACCCAGGACCAGCTAA
AAAGATGGTAGAAGACGGGCAGTCAGGCGATTTGGACAAGATGAGCGATGAAATCTTTCACTGCCCAGTG
TGTTTCAAGGAGTTTGTTTGCAAGTATGAACTGGAGACCCACATGGAGACCCACTCAGATAACCCACTAA
GATGTGACATTTGCTGCGTCACCTTCCGCACACATCGAGGACTGCTGCGCCACAATGCACTTGTCCACAA
GCAGCTTCCCAGAGATGCCATGGGAAGACCTTTTATCCAGAACAACCCTTCGATTCCTGCTGGCTTCCAT
GATTTAGGGTTTACTGACTTCTCCTGTAGGAAGTTTCCTCGAATCTCTCAGGCCTGGTGTGAGACAAACC
TACGGCGGTGCATCAGCGAGCAGCACCGGTTTGTGTGTGACACCTGCGACAAGGCGTTCCCCATGCTGTC
GTCACTCATCCTGCACAGGCAGAGCCACATCCCTGCCGATCAGGGACGGGAGAAGCTCCAGACCAAGACC
CTGGCTGCCGAGTCCTTGGAACAGAAGGCCTTCCTGGCCTTGCTGGGCCTGCAGCACACCAAAGACGTCA
AGCCTGCCCCGGCGGAGGAGCTCCTGCCGGACGACAACCAAGCAATACAGCTCCAGACACTTAAGTACCA
GCTACCTCAGGAGCCTGGCTGCCCCACCGTGCTGAGTGTGTCTCCTCTTGACGCTGCTTCTTTAGGTGGC
TCTCTGACAGTCCTCCCAGCTACCAAGGAGAATATGAAGCATCTGTCCCTGCAGCCCTTCCAGAAGGGCT
TCATCATCCAGCCAGACAGTAGCATTGTGGTTAAGCCTATTTCAGGAGAGTCGGCCATTGAGCTGGCAGA
TATCCAACAGATTCTAAAGATGGCAGCTTCCGCTCCTCCGCAGATCAGTCTTCCGCCACTTTCCAAGGCC
CCTGCCACCCCGCTGCAGGCGATTTTCAAGCACATGCCTCCTTTGAAGCCAAAGCCCTTGGTCACACCCC
GGACAGTGGTAGCCGCCTCCACGCCCCCACCTCTCATCAACGCCCAGCAGGCATCTCCCGGTTGTATCAG
CCCCAGCCTTCCTCCACAGTCCCTGAAGTTCCTCAAGGGGTCGGTGGAGGCAGTGTCCAATGTTCATCTG
CTTCAGTCCAAGTCTGGGATCCAGCCAAGCACCACCACACAGCTCTTCCTGCAGCAAGCTGGAGTGGAGT
TGCCGGGCCAGCCCGAGATGAAGACACAGCTGGAACAAGAGAGTATCATTGAGGCCCTGCTGCCCCTCAA
CATGGAGGCGAAGATCAAGCAGGAGATAACAGAAGGTGACCTCAAGGCCATCATGACAGGCCCCAGTGGC
AAGAAGACCCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTTTGCAACCAGGTGTTTGCTTTCTCTG
GAGTCCTGCGAGCCCACGTTCGCTCCCACCTGGGCATCTCACCCTACCAATGCAACATCTGTGACTATAT
TGCTGCAGACAAAGCCGCCCTGATCCGTCACATCCGCACACACAGCGGGGAACGGCCTTACATCTGCAAG
ATCTGCCACTACCCATTCACGGTCAAAGCCAACTGTGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCA
CCAGGAAGGACATTGAGAAGAACATAGAGTACGTGAGCAGCCCCACCGCAGAGCTGGTGGACGCCTTCTG
CGCCCCAGAGACCGTGTGCAGACTGTGCGGGGAGGATCTGAAGCACTACCGAGCTCTACGCATCCACATG
CGCACACACTGCAGCCGGGGCCTGGGCGGCTGCCACAAAGGCCGGAAACCCTTCGAGTGCAAGGAATGCA
ACGCTCCCTTCGTGGCCAAGCGCAACTGCATCCATCACATCCTCAAGCAGCACCTGCACGTGCCCGAGAA
GGACATCGAGAGCTACGTGCTTGCCACCAACAGTGGCCTCGGCCCCGCGGACACGCCCACGGATGCCGCT
TCCAGAGGAGAAGAGGGCAGCTGTGTCACTTTCGCGGAGTGCAAGCCCCTCGCCACTTTCCTGGAGCCCC
AAAATGGCTTTCTTCACTCGAGCCCCACCCAGCCCCTGCCTTCCCACATCTCTGTCAAGCTGGAGCCAGC
CAGCAGCTTTGCCATGGACTTCAACGAACCCCTTGACTTTTCGCAGAAAGGCCTGGCACTGGTCCAAGTG
AAGCAGGAAAATGTTTCCTCCTTGCTGACGTCTTCCTCCTCCTCTGCCCTCTATGACTGCTCCATGGAGC
CCATTGACCTGTCCATCCCCAAGAGCGTCAAGAAAGGAGACAAGGACACAGTTGTTCCCAGTGACGCCAA
GAAACCGGAACCGGAAGCTGGGCAAGCCGAGCCGCTCTCACCCCGCCCACCACCCTGCCCTACCTTGTCA
GTGACTGTGGAGCCCAAGGGGAGCCTGGAAACCCCCACAGGCACGGTGGTGGCCGTCACCACAGCTGCCA
AGCTAGAGCCCCACACTCAGCCCCTCCAGGGCTCCGTGCAGCTGGCTGTCCCCATCTACTCCCCCGCGCT
CGTCAGCAATACTCCCCTCTTGGGCAATTCTGCTGCCCTCTTGAACAACCCAGCCTTGCTTCGGCCCTTA
CGGCCAAAGCCCCCCCTCCTCTTGCCAAAGCCCTCGATGACAGAGGAGCTGCCGCCACTGGCCTCCATCG
CCCAGATCATTTCTTCCGTGTCCTCGGCCCCTACTCTGCTGAAAACGAAGGTAGCTGACCCTGGACCATC
GATCACCAGCAGTAACACTGTGGCCACAGACAGCCCAGGAAGCTCCATCCCCAAAGCTGCCGCCACCCCC
ACTGACACCACAAGCTCTAAAGAATCCAGTGAGCCACCCCCTGCAGCCAGCAGCCCTGAGGAAGCCTTGC
CTACTGAACAAGGGCCGGCTGCCACTTCCTCGTCGAGGAAGAGGGGCAGGAAAAGGGGACTGAGAAACCG
GCCCCTCCCCAACAGCAGTGCTGTGGACCTGGACTCCAGTGGGGAGTTTGCTAGCATCGAGAAGATGCTG
GCCACCACAGATACCAACAAGTTCAGTCCCTTTCTGCAGACTGCAGAGGATGACACTCAGGAAGAGGTGG
CTGGAGCCCCTGCCGACCAGCATGGGCCCGCTGATGAGGAGCAAGGTAGCCCCGCAGAAGACAGGCTGCT
GAGAGCAAAGCGGAACTCCTATGCCAACTGCCTGCAAAAGATCAACTGTCCCCACTGTCCCCGGGTCTTC
CCTTGGGCCAGCTCCCTGCAGCGGCACATGCTTACACACACTGGTCAGAAACCCTTCCCTTGTCAAAAAT
GCGATGCCTTCTTTTCTACCAAATCTAACTGTGAGCGGCACCAGTTGCGCAAACACGGAGTTACCACCTG
CTCCCTGAGAAGAAACGGGCTTATTCCCCCAAAAGAGAGTGATGTTGGATCCCATGATAGCACAGACAGC
CAGTCAGACACAGACACGTTGACCACCCCAGGTGAGGTGCTGGATCTCACAGCACAGGCTAAAGAGCAGC
CGCCAGCAGAGGGAGCCAGTGAGATCAGTCCGGCTTCACAGGACCTTGCTATCAAAGAGGCCAAAGCAGC
AGCAGCTCCCTCTGAGGAGGAGGAAGAAAAGGAGACAGAGGAGAACCCAGAGCCAGAGGAAGAGTGTCGT
GTGGAAGAGAGCACTGGGGCTGCAGATGCCCCCGAGGAAGACACAGCCAGCAACCAGAGCCTGGATCTTG
ACTTCGCCACCAAGCTGATGGACTTCAAGCTGGCAGAGAGTGAGGCAGGCTCTGTGGACAGCCAAGGCCC
AGCCCAGCAGGAGCCAAAGCATGCCTGCGATACCTGTGGAAAGAACTTCAAGTTCCTGGGCACCCTGAGT
CGCCACAAGAAGGCACACAGCTGCCAGGAGCCGAAGGAGGAGGAAGCAGCGGCACCTTCGCTGGAGAATG
AGGGCGTTGGCAGAGCGGTTGAGGGGCCCTCGCCTTCCCCTGAGCCTGAAGAGAAACCAGCCGAATCCCT
AGCAATCGATCCAACACCAGGAACCAGGGAGGCCTCAGTGGCGAAACAGAATGAAGAAACAGAGGGTCCC
ACTGATGGGGAAGGTACGGCTGAGAAGAGGGGTGACGGTGACAAAAGACCAAAGACAGACTCCCCCAAAA
GCATGGCCAGTAAGGCAGACAAGAGGAAGAAGGTTTGCAGTGTATGCAACAAGCGGTTCTGGTCCCTGCA
GGACCTCACCCGGCACATGAGGTCACACACAGGAGAAAGGCCATACAAGTGTCAGACCTGTGAGCGAACC
TTCACCTTAAAGCACAGCCTGGTTCGACACCAGAGGATCCACCAGAAAGCCAGGCACAGCAAGCACCACG
GGAAAGACAGCGACAAGGATGAGCGGGCTGAGGAGGACAGTGAGGACGAGTCCACCCACAGTGCTACCAA
CCCTGCCTCTGAGAATGAGGCCGAGTCAGCTCCCAGCACCAGCAACCACGTAGCTGTCACCAGGAGCCGG
AAAGAGAGCTTGTCCACTTCTGGGAAGGAATGTAGCCCAGAGGAGAGAGCCGCAGCTGAGCAGGCAGCTG
AGCCCAGTGCCCCCAAAGAGCAGGCGTCTCCAGGTGAAACAGACCCCCAGAGCCCGGCAGCCATCGTGCA
AGACTTGCTGGAGCTGTGCGGCAAGAGGCCTGCCCCAATCCTGGCGGCCACCGACGGGGCCTCACAGCTC
CTGGGCATGGAGTGA

Translation (1754 aa):
MTSNSPIGLEGSDLSSINTMMSAVMSVASVTENGGSPQGIKSPMKPPGPNRIGRRNQETKEEKSSYNCPL
CEKICTTQHQLTMHIRQHNTDTGGADHACSICGKSLSSASSLDRHMLVHSGERPYKCTVCGQSFTTNGNM
HRHMKIHEKDTNSTTAAAPPSPLKRRRLSSKRKLSHDAESEDPGPAKKMVEDGQSGDLDKMSDEIFHCPV
CFKEFVCKYELETHMETHSDNPLRCDICCVTFRTHRGLLRHNALVHKQLPRDAMGRPFIQNNPSIPAGFH
DLGFTDFSCRKFPRISQAWCETNLRRCISEQHRFVCDTCDKAFPMLSSLILHRQSHIPADQGREKLQTKT
LAAESLEQKAFLALLGLQHTKDVKPAPAEELLPDDNQAIQLQTLKYQLPQEPGCPTVLSVSPLDAASLGG
SLTVLPATKENMKHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQILKMAASAPPQISLPPLSKA
PATPLQAIFKHMPPLKPKPLVTPRTVVAASTPPPLINAQQASPGCISPSLPPQSLKFLKGSVEAVSNVHL
LQSKSGIQPSTTTQLFLQQAGVELPGQPEMKTQLEQESIIEALLPLNMEAKIKQEITEGDLKAIMTGPSG
KKTPAMRKVLYPCRFCNQVFAFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHIRTHSGERPYICK
ICHYPFTVKANCERHLRKKHLKATRKDIEKNIEYVSSPTAELVDAFCAPETVCRLCGEDLKHYRALRIHM
RTHCSRGLGGCHKGRKPFECKECNAPFVAKRNCIHHILKQHLHVPEKDIESYVLATNSGLGPADTPTDAA
SRGEEGSCVTFAECKPLATFLEPQNGFLHSSPTQPLPSHISVKLEPASSFAMDFNEPLDFSQKGLALVQV
KQENVSSLLTSSSSSALYDCSMEPIDLSIPKSVKKGDKDTVVPSDAKKPEPEAGQAEPLSPRPPPCPTLS
VTVEPKGSLETPTGTVVAVTTAAKLEPHTQPLQGSVQLAVPIYSPALVSNTPLLGNSAALLNNPALLRPL
RPKPPLLLPKPSMTEELPPLASIAQIISSVSSAPTLLKTKVADPGPSITSSNTVATDSPGSSIPKAAATP
TDTTSSKESSEPPPAASSPEEALPTEQGPAATSSSRKRGRKRGLRNRPLPNSSAVDLDSSGEFASIEKML
ATTDTNKFSPFLQTAEDDTQEEVAGAPADQHGPADEEQGSPAEDRLLRAKRNSYANCLQKINCPHCPRVF
PWASSLQRHMLTHTGQKPFPCQKCDAFFSTKSNCERHQLRKHGVTTCSLRRNGLIPPKESDVGSHDSTDS
QSDTDTLTTPGEVLDLTAQAKEQPPAEGASEISPASQDLAIKEAKAAAAPSEEEEEKETEENPEPEEECR
VEESTGAADAPEEDTASNQSLDLDFATKLMDFKLAESEAGSVDSQGPAQQEPKHACDTCGKNFKFLGTLS
RHKKAHSCQEPKEEEAAAPSLENEGVGRAVEGPSPSPEPEEKPAESLAIDPTPGTREASVAKQNEETEGP
TDGEGTAEKRGDGDKRPKTDSPKSMASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERT
FTLKHSLVRHQRIHQKARHSKHHGKDSDKDERAEEDSEDESTHSATNPASENEAESAPSTSNHVAVTRSR
KESLSTSGKECSPEERAAAEQAAEPSAPKEQASPGETDPQSPAAIVQDLLELCGKRPAPILAATDGASQL
LGME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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