NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48966.1 Public Mus musculus 11 Cep112 23 108 98 CCDS HistoryNCBI Gene:76380Re-query CCDS DB by CCDS ID:48966.1Re-query CCDS DB by GeneID:76380See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106715.7 ENSMUSP00000102326.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106715.7Link to Ensembl Protein Viewer:ENSMUSP00000102326.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106715Re-query CCDS DB by Protein ID:ENSMUSP00000102326
Original member Current member NCBI NM_145688.2 NP_663721.2 Accepted alive Link to Nucleotide Sequence:NM_145688.2Link to Protein Sequence:NP_663721.2Re-query CCDS DB by Nucleotide ID:NM_145688Re-query CCDS DB by Protein ID:NP_663721Link to BLAST:NP_663721.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663721.2 173 Q5PR68-2 173 100% 0 0

Chromosomal Locations for CCDS 48966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108682828 108682875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108752578 108752640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108757670 108757819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108808650 108808739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108855783 108855884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108859343 108859407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108860192 108860195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGAGACCACTGAGGGATACAGGACCATCGGTCCCCAAAGAAAATATGGCCAACAGCAGGCTGAAGCAGA
TCGAGAAGGAATACACTCAGAAGCTTGCCAAATCTTCTCAGATCATAGCAGAACTTCAGACAACCATTTC
CTCTCTGAAAGAGGAGAGCAGTCGGCAGCAGCTTGCTGCAGAAAGGCGGCTCCAGGATGTTATACAAAAG
TTTGAAGATGAGAAGCAGCAGCTGATTAGAGATAATGACCAAGCAATCAAGGCTTTACAAGATGAACTAG
AAACCCGCTCTCATCAGGTGCGAAGTGCAGAGAAAAAGTTACATCACAAAGAACTGGAGGCGCAGGAGCA
GATAATGTACATACGACAAGAATATGAAACAAAATTCAAGGGGTTAATGCCAGCGTCTCTAAGACAAGAA
CTTGAGGACACCATATCCTCCCTAAAGTCACAGGTCAACTTTCTACAAAAGAGGGCATCTATCCTTCAAG
AAGAACTGACCACCTACCAAAGCAGAAGGTAA

Translation (173 aa):
MRPLRDTGPSVPKENMANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQK
FEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKFKGLMPASLRQE
LEDTISSLKSQVNFLQKRASILQEELTTYQSRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH