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Report for CCDS47682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47682.1 Public Homo sapiens 7 ATXN7L1 24 110 108 CCDS HistoryNCBI Gene:222255Re-query CCDS DB by CCDS ID:47682.1Re-query CCDS DB by GeneID:222255See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 47682.1
This CCDS representation is mostly supported by the long mRNA AB033044.1. However, it should be noted that AB033044.1 contains a chimeric 5' end and lacks the supported start codon for this gene. This CCDS representation therefore uses the expected start codon, with support from other human and homologous transcripts, including human BC030616.2 and several ESTs, mouse BY174440.1 and BY202771.1, and cow EV623524.1, DN286973.1 and AW654672.1.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47682.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419735.8 ENSP00000410759.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000419735.8Link to Ensembl Protein Viewer:ENSP00000410759.3Re-query CCDS DB by Nucleotide ID:ENST00000419735Re-query CCDS DB by Protein ID:ENSP00000410759
Original member Current member NCBI NM_020725.2 NP_065776.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020725.2Link to Protein Sequence:NP_065776.1Re-query CCDS DB by Nucleotide ID:NM_020725Re-query CCDS DB by Protein ID:NP_065776Link to BLAST:NP_065776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065776.1 861 Q9ULK2-1 861 100% 0 0

Chromosomal Locations for CCDS 47682.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105607852 105607890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105610529 105610603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105613862 105614816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105620200 105620321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105624075 105624267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105638353 105638609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105639487 105639569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105642838 105643121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105665066 105665288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105788604 105788708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105875812 105875880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105876378 105876558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGACGTCGGAGCGTTCTCGAATCCCGTGTCTCTCGGCTGCTGCTGCCGAAGGAACAGGGAAAAAGCAAC
AAGAAGGAAGAGCAATGGCGACACTGGATCGCAAAGTGCCCAGTCCGGAGGCGTTTCTGGGCAAACCCTG
GTCCTCCTGGATCGACGCCGCCAAATTACACTGCTCCGACAATGTAGATTTAGAAGAGGCTGGAAAAGAG
GGTGGAAAAAGCAGGGAGGTTATGAGGCTTAATAAAGAAGATATGCACTTATTTGGCCATTACCCAGCAC
ATGACGACTTCTATCTCGTAGTGTGCAGTGCCTGTAACCAGGTCGTCAAGCCACAGGTTTTCCAGTCGCA
CTGCGAGAGAAGACACGGTTCAATGTGTAGACCTTCTCCCTCTCCAGTGTCTCCAGCCTCCAATCCCAGG
ACATCACTAGTACAGGTGAAAACAAAAGCCTGTCTCAGCGGCCATCACTCTGCCAGCAGCACCTCAAAGC
CATTCAAAACGCCCAAAGACAATCTACTTACCTCCAGCAGCAAACAGCACACAGTCTTTCCTGCGAAAGG
ATCAAGGGATAAACCATGTGTTCCAGTTCCTGTAGTCAGTTTAGAGAAAATTCCTAACCTAGTGAAGGCA
GATGGTGCCAATGTCAAAATGAACTCCACAACCACTACTGCAGTTTCTGCCTCCTCCACCTCGTCCTCTG
CCGTCTCCACCCCTCCTTTAATTAAGCCTGTCCTGATGTCCAAGTCAGTGCCACCTTCACCAGAGAAGAT
CTTAAATGGCAAAGGAATTCTGCCAACCACCATAGACAAGAAACACCAAAATGGCACCAAAAACAGCAAC
AAGCCTTACAGGAGACTTTCAGAGAGAGAATTTGACCCAAATAAACACTGTGGAGTATTGGATCCCGAGA
CAAAGAAACCTTGCACAAGATCCCTCACCTGCAAGACACATTCGCTAAGCCATCGGAGGGCAGTCCCAGG
CCGGAAAAAGCAATTTGACCTCCTCCTGGCAGAACACAAAGCAAAGTCCCGGGAAAAAGAAGTTAAAGAT
AAAGAGCATCTCCTGACTTCCACGAGGGAAATACTTCCAAGCCAATCCGGGCCGGCACAGGATTCTCTGC
TAGGGTCTTCAGGGAGCTCTGGGCCAGAACCAAAAGTTGCATCCCCTGCAAAATCCAGACCACCCAACTC
TGTACTTCCTAGACCATCATCTGCAAATAGCATAAGCAGCAGCACATCTTCAAATCATAGCGGCCACACT
CCAGAGCCCCCACTCCCACCGGTTGGAGGTGACCTCGCCAGCCGACTGTCCAGTGATGAAGGGGAGATGG
ACGGAGCCGACGAATCCGAGAAGCTAGACTGTCAGTTCTCCACGCACCACCCCAGACCTCTGGCGTTTTG
CTCATTTGGGAGTCGCCTCATGGGACGAGGGTACTATGTGTTTGATAGAAGATGGGATCGTTTTCGATTC
GCACTAAACTCCATGGTAGAAAAACACCTGAATTCACAGATGTGGAAGAAGATCCCTCCTGCGGCAGATA
GCCCCCTGCCCTCGCCAGCAGCCCACATCACCACCCCCGTTCCAGCATCCGTTTTGCAGCCTTTCAGCAA
CCCCAGTGCTGTGTATCTTCCTTCAGCTCCCATCAGCTCGAGGCTCACCTCTTCTTACATAATGACATCA
GCCATGCTCTCAAACGCAGCTTTCGTGACATCGCCGGACCCGAGCGCCCTCATGTCCCACACCACAGCTT
TCCCTCATGTGGCCGCAACCCTCAGCATCATGGACTCAACCTTCAAGGCCCCATCCGCCGTGTCCCCGAT
ACCAGCCGTCATCCCTTCCCCATCCCACAAGCCATCCAAAACCAAAACCAGCAAATCCTCAAAAGTCAAA
GACCTGTCCACCCGTAGCGACGAGTCTCCAAGTAACAAAAAAAGGAAGCCACAGTCTTCGACTTCCTCCT
CCTCCTCCTCCTCCTCCTCTTCCTTGCAGACATCCCTCTCGTCTCCACTGTCAGGGCCTCACAAAAAGAA
CTGTGTTTTGAATGCCAGTTCTGCTTTGAACTCCTATCAGGCGGCCCCTCCCTATAACAGCCTGTCTGTG
CACAACTCAAACAATGGGGTGAGCCCACTCAGTGCCAAACTGGAGCCCTCAGGACGGACCTCGCTGCCCG
GCGGCCCCGCGGACATAGTGAGACAGGTGGGCGCGGTGGGAGGCAGCAGTGACTCCTGTCCCCTCTCTGT
GCCCTCCCTTGCGCTCCACGCAGGGGACCTCTCTCTGGCCTCACACAATGCTGTGTCTTCTCTGCCCCTC
TCTTTTGACAAATCAGAAGGAAAAAAGCGTAAGAACTCGAGTTCTAGTAGCAAAGCCTGTAAAATCACTA
AAATGCCTGGTATGAATAGCGTTCACAAAAAGAACCCGCCCAGCCTTCTCGCACCGGTGCCCGATCCCGT
TAACAGCACCTCCTCTCGGCAGGTTGGGAAAAATAGCAGCCTAGCTTTGTCACAATCCAGTCCTTCAAGT
ATATCCAGCCCAGGACACAGCCGACAGAACACAAACAGAACGGGCAGGATAAGGACTCTTCCATAA

Translation (861 aa):
MTSERSRIPCLSAAAAEGTGKKQQEGRAMATLDRKVPSPEAFLGKPWSSWIDAAKLHCSDNVDLEEAGKE
GGKSREVMRLNKEDMHLFGHYPAHDDFYLVVCSACNQVVKPQVFQSHCERRHGSMCRPSPSPVSPASNPR
TSLVQVKTKACLSGHHSASSTSKPFKTPKDNLLTSSSKQHTVFPAKGSRDKPCVPVPVVSLEKIPNLVKA
DGANVKMNSTTTTAVSASSTSSSAVSTPPLIKPVLMSKSVPPSPEKILNGKGILPTTIDKKHQNGTKNSN
KPYRRLSEREFDPNKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKD
KEHLLTSTREILPSQSGPAQDSLLGSSGSSGPEPKVASPAKSRPPNSVLPRPSSANSISSSTSSNHSGHT
PEPPLPPVGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWDRFRF
ALNSMVEKHLNSQMWKKIPPAADSPLPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIMTS
AMLSNAAFVTSPDPSALMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSPSHKPSKTKTSKSSKVK
DLSTRSDESPSNKKRKPQSSTSSSSSSSSSSLQTSLSSPLSGPHKKNCVLNASSALNSYQAAPPYNSLSV
HNSNNGVSPLSAKLEPSGRTSLPGGPADIVRQVGAVGGSSDSCPLSVPSLALHAGDLSLASHNAVSSLPL
SFDKSEGKKRKNSSSSSKACKITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVGKNSSLALSQSSPSS
ISSPGHSRQNTNRTGRIRTLP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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